1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgcctacaagtgtacaatccaattccatttgctttttcaactatactgcatggtgtgctttttgtttatctacttctgacttctacattgtgtttactagGCACTCTCTCATTATCCCAAAATCTCATTTCCCTTCACTGGATGCCACTCCTCCATCA
species | Glycine max |
transcript | GLYMA08G45960.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACAAGTCCACTGAGTCATGGGTAAGEST: gi|120530846|gb|EH258979.1|EH258979
genomic: TACAAGTCCACTGAGTCAT--G---Ggtaaggtatc ... tgttta
EST: GAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGTCATGG GCACTCTCTCATTATCCCAAAATCTCATTTCCCTTCACTGGATGCCACTCCEST: gi|254331675|gb|GR846092.1|GR846092
genomic: GAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGTCATGGgtaaggtatc ... tgtttactagGCACTCTCTCATTATCCCAAAATCTCATTTCCCTTCACTGGATGCCACTCC
EST: GAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGTCATGGGTAAGEST: gi|26047413|gb|CA784215.1|CA784215
genomic: GAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGTCAT--G---Ggtaaggtatc ... tgttta
EST: GAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGTCATGG GCACTCTCTCATTATCCCAAAATCTCATTTCCCTTCACTGGATGCCACTCC
genomic: GAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGTCATGGgtaaggtatc ... tgtttactagGCACTCTCTCATTATCCCAAAATCTCATTTCCCTTCACTGGATGCCACTCC
ctgcatggtgtgctttttgtttatctacttctgacttctacattgtgtttactagGCACTCTCTCATTATCCCAAAATCTCATTTCCCTTCACTGGATGCCACTCCTCCATCA
ttctgac putative branch site (score: 2)
tttttgtttatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcctacaagtgtacaatccaattccatttgctttttcaactatactgcatggtgtgctttttgtttatctacttctgacttctacattgtgtttactagGCACTCTCTCATTATCCCAAAATCTCATTTCCCTTCACTGGATGCCACTCCTCCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
tgcctac
- - - - - - - caatcca
- - - - - - - - - - - - -catttgc
- - - - - - - - - - - - - - - - - - - - - - - -gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacatt