1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcatgaagattaaatgatttgttcctaagaagccaattttacgtgttcttttgggcaatgaattagtcttgttaaaattttcttaactttgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG
species | Glycine max |
transcript | GLYMA08G45770.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|207706975|gb|GD689035.1|GD689035
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|26058968|gb|CA801882.1|CA801882
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|254318039|gb|GR832207.1|GR832207
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|298165755|gb|HO008726.1|HO008726
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCATTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCCCACAGGAGGTCATCGGAGATGCACTEST: gi|5753653|gb|AI960940.1|AI960940
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|193517839|gb|FK473058.1|FK473058
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|4436991|gb|AI522856.1|AI522856
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|151413141|gb|EV282949.1|EV282949
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|209703578|gb|BW678280.1|BW678280
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|193398689|gb|FK361699.1|FK361699
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|192332922|gb|FK025019.1|FK025019
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|192333814|gb|FK025075.1|FK025075
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|192319434|gb|FK005874.1|FK005874
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|16106410|gb|BI894150.1|BI894150
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|151396097|gb|EV265974.1|EV265974
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|5605874|gb|AI899972.1|AI899972
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|213594190|gb|DB963787.1|DB963787
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|213597920|gb|DB958301.1|DB958301
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|192319433|gb|FK005873.1|FK005873
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|298171428|gb|HO016460.1|HO016460
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|298180050|gb|HO025265.1|HO025265
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|213603401|gb|DB970470.1|DB970470
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|192327797|gb|FK022398.1|FK022398
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|151412215|gb|EV282027.1|EV282027
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGACCGACGACGATCTGAAACT ACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|193458142|gb|FK422482.1|FK422482
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|213607341|gb|DB957149.1|DB957149
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|151413002|gb|EV282810.1|EV282810
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|209714918|gb|BW682083.1|BW682083
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|298195035|gb|HO043563.1|HO043563
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTEST: gi|192332466|gb|FK024227.1|FK024227
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCCCACAGGAGGTCATCGGAGATGCACTEST: gi|298172900|gb|HO019884.1|HO019884
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
EST: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT GCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
genomic: CCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACTgtaattattt ... tgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACT
gttcttttgggcaatgaattagtcttgttaaaattttcttaactttgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG
ttttt CT-rich tract
ttgttaaaattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatgaagattaaatgatttgttcctaagaagccaattttacgtgttcttttgggcaatgaattagtcttgttaaaattttcttaactttgatttttagGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCATCGGAGATGCACTCGGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
ttcatga
- - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggcaatg