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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttaacctttgttcattagttgcttatgtggctggggttttatttttcctcttaatttgatatctaagtgatgttaatcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAG

Basic information

species Glycine max
transcript GLYMA08G44410.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306569|gb|FG997239.1|FG997239
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|192312658|gb|FK004346.1|FK004346
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|193464599|gb|FK429699.1|FK429699
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|208254200|gb|GE051670.1|GE051670
EST:     AAACCCCTGACGCC-AAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|7042339|gb|AW472233.1|AW472233
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|192312657|gb|FK004345.1|FK004345
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|192323021|gb|FK016752.1|FK016752
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|192294522|gb|FG987451.1|FG987451
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGTTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|6913352|gb|AW394882.1|AW394882
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATGGTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|19053064|gb|BM731731.1|BM731731
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|17023264|gb|BM094298.1|BM094298
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|7588400|gb|AW704196.1|AW704196
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC
EST: gi|298181915|gb|HO026090.1|HO026090
EST:     AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGG                         GCAAGTGATCGTTAGAGCTCGGAATCTACGTGCTGCAGCGAATTTTATTCC
genomic: AAGCTTATGCACTCTTCTCAAACCCCTGACGCCAAAATTGTTAAAGAAGGgtatgcttaa ... atcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggggttttatttttcctcttaatttgatatctaagtgatgttaatcaattcagGCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAG
                                        tgttaat  putative branch site (score: 3)
      ttttatttttcctctt  TA-rich tract