1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgtttatcaccaagtcccgtctgcccccagcttcttaaaatttttatcttcgatatttgttgttgttttctttttgcttatatttttatttatgtatcagCCAATATATGGGTCCACCTCTAATGATCCTCCGCAGTTCAAAAGAGCTGCTGGACACAAGGATTTGTTCTACATTGATGACAAAGACGTGGATATCAAAG
species | Glycine max |
transcript | GLYMA08G43490.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTTACTACAGAGGATGTGGATACTGCACTTGCATTGAGAAATTTGGAG CCAATATATGGGTCCACCTCTAATGATCCTCCGCAGTTCAAAAGAGCTGCTEST: gi|10232940|gb|BE801828.1|BE801828
genomic: TTCTTACTACAGAGGATGTGGATACTGCACTTGCATTGAGAAATTTGGAGgtgacttgct ... tatgtatcagCCAATATATGGGTCCACCTCTAATGATCCTCCGCAGTTCAAAAGAGCTGCT
EST: TTCTTACTACAGAGGATGTGGATACTGCACTTGCATTGAGAAATTTGGAG CCAATATATGGGTCCACCTCTAATGATCCTCCGCAGTTCAAAAGAGCTGCT
genomic: TTCTTACTACAGAGGATGTGGATACTGCACTTGCATTGAGAAATTTGGAGgtgacttgct ... tatgtatcagCCAATATATGGGTCCACCTCTAATGATCCTCCGCAGTTCAAAAGAGCTGCT
atcttcgatatttgttgttgttttctttttgcttatatttttatttatgtatcagCCAATATATGGGTCCACCTCTAATGATCCTCCGCAGTTCAAAAGAGCTGCTGGACACAAGGATTTGTTCTACATTGATGACAAAGACGTGGATATCAAAG
tttttattt CT-rich tract
ttgttttctttttgct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttatcaccaagtcccgtctgcccccagcttcttaaaatttttatcttcgatatttgttgttgttttctttttgcttatatttttatttatgtatcagCCAATATATGGGTCCACCTCTAATGATCCTCCGCAGTTCAAAAGAGCTGCTGGACACAAGGATTTGTTCTACATTGATGACAAAGACGTGGATATCAAAG
- - - tcaccaa
- - - - - - - - - - ctgcccc
- - - - - - - - - - - - - -cagcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgttg