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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgttttctacatctattcatgaatttcccttgtattctttattcttataatctacattttttggtttgacttgaatttctttttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGAGGTTCTGTTGTCTGAAGGATGTGATTACTTTGCTCCTCATTATAAGTAG

Basic information

species Glycine max
transcript GLYMA08G43290.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G43290.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ36475 (Selaginella moellendorffii), 3'ss of exon 2
gtttgtgttttctacatctattcatgaatttcccttgtattctttattcttataatctacattttttggtttgacttgaatttctttttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGAGG--TTCTGTTGTCTGAAGGATGTGATTACTTTGCTCCTCATTATAAGTAG
                                    |||   ||| ||||| |  | | | ||||||  |||  ||||| | |  |||    | ||||||||||||| || || || || || |||||||||||||||||||| |||||  | | |||||   |                                  
------------------------------------gtagcgtttcttcttttccttttcttttttt--ttt--cttgattgttcttt----gtagTTGGAAATGGAAGATGGCGATGAAATAGATGCCATGCTTCACCAGACTGGAGGAATGCCGTTGTTATAG---------------------------------

upper sequence: GLYMA08G43290.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ18574 (Selaginella moellendorffii), 3'ss of exon 2
gtttgtgttttctacatctattcatgaatttcccttgtattctttattcttataatctacattttttggtttgacttgaatttctttttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGAGG--TTCTGTTGTCTGAAGGATGTGATTACTTTGCTCCTCATTATAAGTAG
                                    |||   ||| ||||| |  | | | ||||||  |||  ||||| | |  |||    | ||||||||||||| || || || || || |||||||||||||||||||| |||||  | | |||||                                      
------------------------------------gtagcgtttcttcttttccttttcttttttt--ttt--cttgattgttcttt----gtagTTGGAAATGGAAGATGGCGATGAAATAGATGCCATGCTTCACCAGACTGGAGGAATGCCGTTGTAG------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410540|gb|EV280355.1|EV280355
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCACGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|254342371|gb|GR858533.1|GR858533
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|208163462|gb|GD964922.1|GD964922
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|193513295|gb|FK470059.1|FK470059
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|192323104|gb|FK018935.1|FK018935
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|58018360|gb|CX705102.1|CX705102
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|254333462|gb|GR848380.1|GR848380
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCACATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|6964300|gb|AW432993.1|AW432993
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|209715507|gb|BW682173.1|BW682173
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|193620044|gb|FK567197.1|FK567197
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|33390052|gb|CA853259.1|CA853259
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|151403288|gb|EV273098.1|EV273098
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|151406937|gb|EV276752.1|EV276752
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|18723759|gb|BM523497.1|BM523497
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|254346518|gb|GR856240.1|GR856240
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAT                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|13787539|gb|BG650131.1|BG650131
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|254336011|gb|GR841336.1|GR841336
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|193652144|gb|FK597764.1|FK597764
EST:     TTTTCTTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: TTTTC-TGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|209715508|gb|BW682174.1|BW682174
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|10234490|gb|BE803378.1|BE803378
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACTAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|208104206|gb|GD902279.1|GD902279
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|18735667|gb|BM528902.1|BM528902
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|13789201|gb|BG651792.1|BG651792
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|192322538|gb|FK014659.1|FK014659
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|13791472|gb|BG654063.1|BG654063
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|192309269|gb|FG999146.1|FG999146
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|18721133|gb|BM523320.1|BM523320
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|5666632|gb|AI930668.1|AI930668
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|9986733|gb|BE660841.1|BE660841
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|10255190|gb|BE822956.1|BE822956
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|207842213|gb|GD817569.1|GD817569
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGGCGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|151411716|gb|EV281527.1|EV281527
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|193367104|gb|FK329172.1|FK329172
EST:     ACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: ACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|9204037|gb|BE330261.1|BE330261
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|213613520|gb|DB963250.1|DB963250
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|208335682|gb|GE138401.1|GE138401
EST:     TTTCTTGTTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: TTTC-TG-TTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|18848610|gb|BM567760.1|BM567760
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|254333461|gb|GR848379.1|GR848379
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
EST: gi|254326995|gb|GR836604.1|GR836604
EST:     CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAG                         TTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA
genomic: CTTTTCTGTTTGATGGACGCCGCCTCCGAGCTGAGCAGACTCCAGATGAGgtttgtgttt ... tttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttattcttataatctacattttttggtttgacttgaatttctttttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGAGGTTCTGTTGTCTGAAGGATGTGATTACTTTGCTCCTCATTATAAGTAG
                           gtttgac  putative branch site (score: 4)
                                       tttctttttgttgc  putative PPT
     ttcttataatctacat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgtgttttctacatctattcatgaatttcccttgtattctttattcttataatctacattttttggtttgacttgaatttctttttgttgcagTTGGAAATGGAGGACGGGGACGAGATTGATGCCATGCTTCACCAGACAGGAGGTTCTGTTGTCTGAAGGATGTGATTACTTTGCTCCTCATTATAAGTAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC