1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcctttcattccttaagcattaaatttttgtttgttgttttccaatggcaagtttcctcacaattgttttccacttactaggattttatttttgtttcagGAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAG
species | Glycine max |
transcript | GLYMA08G43220.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGCTCCATTGCTATGGAATTCTTTTGGTACAATTGCTGCACTTTTGCAG GAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCAEST: gi|6134009|gb|AW132459.1|AW132459
genomic: TTGCTCCATTGCTATGGAATTCTTTTGGTACAATTGCTGCACTTTTGCAGgtatgttatc ... tttgtttcagGAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCA
EST: TTGCTCCATTGCTATGGAATTCTTTTGGTACAATTGCTGCACTTTTGCAG GAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCAEST: gi|6134031|gb|AW132481.1|AW132481
genomic: TTGCTCCATTGCTATGGAATTCTTTTGGTACAATTGCTGCACTTTTGCAGgtatgttatc ... tttgtttcagGAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCA
EST: TTGCTCCATTGCTATGGAATTCTTTTGGTACAATTGCTGCACTTTTGCAG GAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCAEST: gi|15338043|gb|BI498699.1|BI498699
genomic: TTGCTCCATTGCTATGGAATTCTTTTGGTACAATTGCTGCACTTTTGCAGgtatgttatc ... tttgtttcagGAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCA
EST: TTGCTCCATTGCTATGGAATTCTTTTGGTACAATTGCTGCACTTTTGCAG GAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCAEST: gi|7478472|gb|AW666279.1|AW666279
genomic: TTGCTCCATTGCTATGGAATTCTTTTGGTACAATTGCTGCACTTTTGCAGgtatgttatc ... tttgtttcagGAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCA
EST: TTGCTCCATTGCTATGGAATTCTTTTGGTACAATTGCTGCACTTTTGCAG GAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCA
genomic: TTGCTCCATTGCTATGGAATTCTTTTGGTACAATTGCTGCACTTTTGCAGgtatgttatc ... tttgtttcagGAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCA
tggcaagtttcctcacaattgttttccacttactaggattttatttttgtttcagGAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAG
cacttac putative branch site (score: 2)
ttttatttttgtttc putative PPT
attttatttttgtttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctttcattccttaagcattaaatttttgtttgttgttttccaatggcaagtttcctcacaattgttttccacttactaggattttatttttgtttcagGAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAG
- - - cattcct
- - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcaca