1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taataaaccattcctgatttatatttttaattaaatccaagctgcttattttcaatattttcttatcatgtatgctaagacaagctacttgactagacagGAGTTCAAATAGTGGATATTTGCTTGGCCACTAGAGCCCACAATGGAGGACTGATCGACCTGCACGAACTCTGCAGTCTCCTTCGCCAGAGACGAAAAAG
species | Glycine max |
transcript | GLYMA08G42650.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGTTTCTGGTCAGAGCTGTTAGGACTTGGTGACTTCTATTATGAACTCG GAGTTCAAATAGTGGATATTTGCTTGGCCACTAGAGCCCACAATGGAGGACEST: gi|6847785|gb|AW350075.1|AW350075
genomic: GGGTTTCTGGTCAGAGCTGTTAGGACTTGGTGACTTCTATTATGAACTCGgttagtgata ... gactagacagGAGTTCAAATAGTGGATATTTGCTTGGCCACTAGAGCCCACAATGGAGGAC
EST: GTTAGGACNTGGTGACTTCTATTATGAACNNN NNGTTCAAATAGTGGATATTTGCTTNNNCACTAGAGCCCACAATGGAGGACEST: gi|4314023|gb|AI461142.1|AI461142
genomic: GTTAGGACTTGGTGACTTCTATTATGAACTCGgttagtgata ... gactagacagGAGTTCAAATAGTGGATATTTGCTTGGCCACTAGAGCCCACAATGGAGGAC
EST: GGGTTTCTGGTCAGAGCTGTTAGGACTTGGTGACTTCTATTATGAACTCG GAGTTTAAATAAGTG-ATTATTGGCTTGGCCACTAGAGCCCACAATGGAGG
genomic: GGGTTTCTGGTCAGAGCTGTTAGGACTTGGTGACTTCTATTATGAACTCGgttagtgata ... gactagacagGAGTTCAAATA-GTGGAT-ATTTGCTTGGCCACTAGAGCCCACAATGGAGG
ttattttcaatattttcttatcatgtatgctaagacaagctacttgactagacagGAGTTCAAATAGTGGATATTTGCTTGGCCACTAGAGCCCACAATGGAGGACTGATCGACCTGCACGAACTCTGCAGTCTCCTTCGCCAGAGACGAAAAAG
acttgac putative branch site (score: 4)
ttcaatattttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taataaaccattcctgatttatatttttaattaaatccaagctgcttattttcaatattttcttatcatgtatgctaagacaagctacttgactagacagGAGTTCAAATAGTGGATATTTGCTTGGCCACTAGAGCCCACAATGGAGGACTGATCGACCTGCACGAACTCTGCAGTCTCCTTCGCCAGAGACGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - -ccattcc
- - - - - - - - - - - - - - - - - - - aagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctactt