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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaatactcaaacaatttcttgattcttttactctctttaacatcacagtgaaatttctggttaactttagctgaattattgaatctgactcgattttaataagcagacttttgttgagatgccactgctttaacttatttctttgttaatacttgctgatcttgtgagttccttttccagCTCGAAAATTCTCCCAAGCCATTGATCTATATACACAAGCAATTGAGCTGAACAGTCAAAATGCAGTTTACTTTTCTAATCGTGCCTTTGCCCATCTTCG

Basic information

species Glycine max
transcript GLYMA08G42380.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213606633|gb|DB972540.1|DB972540
EST:     TGTTTCAAAGGCTGAAGAATTTAAACTCCTTGCCAATGAAGCATTCAATG                         CTCGAAAATTCTCCCAAGCCATTGATCTATATACACAAGCAATTGAGCTGA
genomic: TGTTTCAAAGGCTGAAGAATTTAAACTCCTTGCCAATGAAGCATTCAATGgtaattaata ... ccttttccagCTCGAAAATTCTCCCAAGCCATTGATCTATATACACAAGCAATTGAGCTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttaacttatttctttgttaatacttgctgatcttgtgagttccttttccagCTCGAAAATTCTCCCAAGCCATTGATCTATATACACAAGCAATTGAGCTGAACAGTCAAAATGCAGTTTACTTTTCTAATCGTGCCTTTGCCCATCTTCG
                            tgctgat  putative branch site (score: 3)
                                           ttccttttcc  putative PPT
     taacttatttctttgt  TA-rich tract