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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggttcctacaactagatttttctttctatgattggtaaaggattatgtatgaatgatacacggtataacataatggttattaatgcttggcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTG

Basic information

species Glycine max
transcript GLYMA08G41280.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G41280.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 2
--aggttcctacaactagatttttctttctatgattggtaaaggattatgtatg-aatgatacacggtataacataatggttattaatgcttggcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTG
  || ||       ||  | ||| |  |  |  ||  ||    | | || ||   |||  |  || |     |||||   ||    ||||||  |||||||||||||||||  | || ||  | || || ||||| || |||||  | |  ||||| ||||||||||||||| |||||||||||||  ||||||| |  || |
tcagattaggcagtcttaagtttgcactgcagtataagtttgtg-tcatttacataatatttaactgctgctcataaatatttcctatgctt--caattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG

upper sequence: GLYMA08G41280.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
aggttcctacaactagatttttctttctatgattggtaaaggattatgta-tgaatgatacacggtataacataatggttattaatgcttggcaat---tgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTG
        |||  | |||     ||  | |          || || | || | ||   | ||  | ||      ||| | ||  |   ||||| ||   |||||||||| ||  |||| ||  ||||||| ||||| || || ||||| |  ||||| ||||||||||||||||| ||||| ||||||||||||||  ||||||
---actgcacattttgatagcatttattgtagcacaatttggtttgtatacttaaaatttcagtgcatttttggatg-tgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602908|gb|DB972482.1|DB972482
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|254342822|gb|GR858984.1|GR858984
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|7234506|gb|AW569843.1|AW569843
EST:     GGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: GGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|4313827|gb|AI460946.1|AI460946
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|15813095|gb|BI785370.1|BI785370
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|193571086|gb|FK528103.1|FK528103
EST:     GGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: GGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|298170008|gb|HO018632.1|HO018632
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGGTCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|19346995|gb|BM891875.1|BM891875
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|6913421|gb|AW394960.1|AW394960
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|18734940|gb|BM528473.1|BM528473
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|23730887|gb|BU763550.1|BU763550
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|254329350|gb|GR833722.1|GR833722
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|4292763|gb|AI441951.1|AI441951
EST:     AGAGGGCCAGCGGACCCAATTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACATAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|151407425|gb|EV277240.1|EV277240
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|193436689|gb|FK400876.1|FK400876
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAAATAATAAGAGATCAAG-TTACCCAAAA
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAA-TA-TAAGAGATCAAGGTTACCCAAAA
EST: gi|298177113|gb|HO027008.1|HO027008
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|192324116|gb|FK017847.1|FK017847
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|31306551|gb|CD391754.1|CD391754
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|6071303|gb|AW100690.1|AW100690
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|192329054|gb|FK021099.1|FK021099
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|208252885|gb|GE053463.1|GE053463
EST:     CAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: CAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|193430756|gb|FK392428.1|FK392428
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAA-C
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|31460108|gb|CD402136.1|CD402136
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATTAAGGTTACCCAGATAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|193339967|gb|FK306658.1|FK306658
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|207687126|gb|GD669814.1|GD669814
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTA
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTA
EST: gi|14516244|gb|BI094916.1|BI094916
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|4295149|gb|AI442292.1|AI442292
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|23726448|gb|BU761217.1|BU761217
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|15203058|gb|BI425826.1|BI425826
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|254323978|gb|GR836210.1|GR836210
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|298163680|gb|HO012413.1|HO012413
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAATGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|151396864|gb|EV266737.1|EV266737
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGCCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|151410951|gb|EV280766.1|EV280766
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|10844777|gb|BF067979.1|BF067979
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|31460300|gb|CD402268.1|CD402268
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAGAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|7639430|gb|AW733753.1|AW733753
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|6913607|gb|AW395137.1|AW395137
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
EST: gi|17963154|gb|BM269906.1|BM269906
EST:     AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGG                         ATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC
genomic: AGAGGGCCAGCGGACCCAAGTGCCCTGTCACTGGAAAGAGGATTCAAGGGgtatgtatgc ... gcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtatgaatgatacacggtataacataatggttattaatgcttggcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTG
                                 tattaat  putative branch site (score: 2)
                   tataacataatggtta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aggttcctacaactagatttttctttctatgattggtaaaggattatgtatgaatgatacacggtataacataatggttattaatgcttggcaattgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - tcctaca
- - - - - - - - - - - - - - - - - - - - - - - tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - atacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttaatgc