1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgtgtaggagtttacaaatcctgtattttttgttttcttaagtgtgtgtttctctttactttgtggttgtggatggtttaatgtatagtaacaatctaattgtgccttttcttggtgcttttttccagCCCAGATGACACCCCTTGGGATGGAG
species | Glycine max |
transcript | GLYMA08G40860.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGG CCCAGATGACACCCCTTGGGATGGAGEST: gi|192297623|gb|FG989571.1|FG989571
genomic: CAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGgtgtgtagga ... ttttttccagCCCAGATGACACCCCTTGGGATGGAG
EST: GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGG CCCAGATGACACCCCTTGGGATGGAGEST: gi|192306185|gb|FG995035.1|FG995035
genomic: GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGgtgtgtagga ... ttttttccagCCCAGATGACACCCCTTGGGATGGAG
EST: GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGG CCCAGATGACACCCCTTGGGATGGAGEST: gi|209721200|gb|BW665731.1|BW665731
genomic: GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGgtgtgtagga ... ttttttccagCCCAGATGACACCCCTTGGGATGGAG
EST: GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGG CCCAGATGACACCCCTTGGGATGGAG
genomic: GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGgtgtgtagga ... ttttttccagCCCAGATGACACCCCTTGGGATGGAG
tggtttaatgtatagtaacaatctaattgtgccttttcttggtgcttttttccagCCCAGATGACACCCCTTGGGATGGAG
ccttttcttggtgctt CT-rich tract
taatgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtaggagtttacaaatcctgtattttttgttttcttaagtgtgtgtttctctttactttgtggttgtggatggtttaatgtatagtaacaatctaattgtgccttttcttggtgcttttttccagCCCAGATGACACCCCTTGGGATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA