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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccatgcttatcaacaatttcactttctttttgaatgtagtagtattcattcatcgtttaatgaagagaatattgcgcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG

Basic information

species Glycine max
transcript GLYMA08G37270.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0211g00070.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtccat--gcttatcaacaatttcactttcttt-ttgaatgtagtagtattcatt-catcgtttaatgaagagaatattgcgcct-------ttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG
|||||   ||  | || |||   |||    ||| | | ||   |   | | | || |||   |||||| |         |  ||  |         || |||||||| ||||||||||||||||| || | ||| ||||||||||| ||||| || ||||| ||||| |||||||| || |||||||||
gtaagcgaattagtttttcatttattgatttttttctcttctctcctggaatgtttattatgtcgtttcaccttatttgttctgttctggtataaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCAGACATTATAGAGCTCGAGAAAGCAAGACAATGGAAG

upper sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtccat--gcttatcaacaatt--tcactttctttttgaatgtagtagtattcatt-catcgtttaatgaagagaatattgcgcct-------ttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG
|||||   ||  | || |||   |||  |   |||  | ||   |   | | | || |||   |||||| ||        |  ||  |         || |||||||| ||||||||||||||||| || | ||| ||||||||||| ||||| || ||||||||||| |||||||| || |||||||||
gtaagcgaattagtttttcatttattgattttttttctcttctctcctggaatgtttattatgtcgtttcatcttatttgttctgttctggtataaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG

upper sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0211g00160.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtccat--gcttatcaacaatt---tcactttctttttgaatgtagtagtattcatt-catcgtttaatgaagagaatattgcgcct-------ttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG
|||||   ||  | || |||   |||   |   |||  | ||   |   | | | || |||   |||||| ||        |  ||  |         || |||||||| ||||||||||||||||| || | ||| ||||||||||| ||||| || ||||||||||| |||||||| || |||||||||
gtaagcgaattagtttttcatttattgatttttttttctcttctctcctggaatgtttattatgtcgtttcatcttatttgttctgttctggtataaatttcagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCAGACATTATTGAGCTCGAGAAAGCAAGACAATGGAAG

upper sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0211g00100.t01 (Vitis vinifera), 3'ss of exon 2
---------gtaagtccatgcttatcaacaatttcactttcttttt--gaatgt-agtagtattcattcatcgtttaatgaagagaatattgcgcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG
          ||  |      ||||  |   |||    |||| |    |||||| | |  | |   |||| | | |           |  |     ||| |||||||| ||||||||||||||||| || | ||| ||||||||||| ||||| || ||||| ||||| |||||||| || |||||||||
gtaagcgaattagtttttcatttattgatttttttctcttctctcctggaatgttaattatgtcgtttcaccttatttgttctgttctggtataaattt-cagTGGCCAAAGCAGTTGAATGCTCCGCTGGGGGTTGTGGATCCTGAAATTGCAGACATTATAGAGCTCGAGAAAGCAAGACAATGGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724908|gb|BW669597.1|BW669597
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213597862|gb|DB958243.1|DB958243
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209711968|gb|BW679047.1|BW679047
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209699627|gb|BW655719.1|BW655719
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213619491|gb|DB969442.1|DB969442
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213589006|gb|DB973106.1|DB973106
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213602128|gb|DB962621.1|DB962621
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213611858|gb|DB964806.1|DB964806
EST:     CGTCTTTGCCTGAT-AAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGACCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209715301|gb|BW654188.1|BW654188
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|208173106|gb|GD967637.1|GD967637
EST:     CGTCTTTGCCTGATGAAGCNGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209719837|gb|BW674989.1|BW674989
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209699197|gb|BW656186.1|BW656186
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|120529377|gb|EH257511.1|EH257511
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209708191|gb|BW678561.1|BW678561
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209704314|gb|BW683546.1|BW683546
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|120530707|gb|EH258840.1|EH258840
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|120533051|gb|EH261184.1|EH261184
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209724195|gb|BW659729.1|BW659729
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213592503|gb|DB971645.1|DB971645
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209715019|gb|BW650870.1|BW650870
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209709691|gb|BW668227.1|BW668227
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|14205774|gb|BG839452.1|BG839452
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209728365|gb|BW660003.1|BW660003
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209700117|gb|BW652975.1|BW652975
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209726286|gb|BW680211.1|BW680211
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209716859|gb|BW682261.1|BW682261
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209708166|gb|BW673829.1|BW673829
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209718642|gb|BW662720.1|BW662720
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213587729|gb|DB955591.1|DB955591
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209715940|gb|BW650957.1|BW650957
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213597651|gb|DB962561.1|DB962561
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213606611|gb|DB972532.1|DB972532
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213617924|gb|DB957377.1|DB957377
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213601602|gb|DB972366.1|DB972366
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209721355|gb|BW654549.1|BW654549
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213599231|gb|DB962282.1|DB962282
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213597587|gb|DB962553.1|DB962553
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213617635|gb|DB969347.1|DB969347
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209727410|gb|BW651932.1|BW651932
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209727383|gb|BW651931.1|BW651931
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209725631|gb|BW663120.1|BW663120
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|213587994|gb|DB957453.1|DB957453
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209708194|gb|BW678564.1|BW678564
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|120533233|gb|EH261366.1|EH261366
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
EST: gi|209710568|gb|BW676520.1|BW676520
EST:     CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACA                         TGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT
genomic: CGTCTTTGCCTGATGAAGCTGTTTACGACAAGGAGCGACCCGGAGTTACAgtaagtccat ... gcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatgtagtagtattcattcatcgtttaatgaagagaatattgcgcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG
                        gtttaat  putative branch site (score: 4)
                                            cgccttt  putative PPT
                         tttaatgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtaagtccatgcttatcaacaatttcactttctttttgaatgtagtagtattcattcatcgtttaatgaagagaatattgcgcctttgcagTGGCCGAAGCAGTTGAATGCTCCACTTGAGGTCGTGGATCCTGAGATTGCTGATATTATTGAGCTTGAGAAAGCTAGGCAATGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG