Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagagacagtgagtgagaattcttttttacatttttgttctaattttttcactcttaattgacaaattaccagaggcaccatttttggtttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGCCAGAAACTAAGCTCGAGGCTAAAATGGTTGAAGCAATGCAGCGGAGGG

Basic information

species Glycine max
transcript GLYMA08G33830.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298193020|gb|HO033465.1|HO033465
EST:     CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG                         GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: gi|193338758|gb|FK302201.1|FK302201
EST:     CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG                         GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: gi|151409948|gb|EV279756.1|EV279756
EST:     CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG                         GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: gi|208314269|gb|GE116965.1|GE116965
EST:     CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG                         GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: gi|298163700|gb|HO012433.1|HO012433
EST:     CCCAAGGAGCTTGGGAACAAACTCCTGCCCCTTCTTCTCCTTGGTCATAG                         GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGACG
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: gi|151412853|gb|EV282665.1|EV282665
EST:     CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG                         GCAATGGGAGGTACACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: gi|298198185|gb|HO039724.1|HO039724
EST:     CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG                         GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: gi|298169069|gb|HO020429.1|HO020429
EST:     CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG                         GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACTTAGAAAGGGATCGATG
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: gi|192305726|gb|FG995696.1|FG995696
EST:     CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG                         GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTATAAAGGGATCGATG
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: gi|22523171|gb|BU081982.1|BU081982
EST:     CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG                         GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcactcttaattgacaaattaccagaggcaccatttttggtttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGCCAGAAACTAAGCTCGAGGCTAAAATGGTTGAAGCAATGCAGCGGAGGG
            aattgac  putative branch site (score: 3)
          ttaattgacaaatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agagagacagtgagtgagaattcttttttacatttttgttctaattttttcactcttaattgacaaattaccagaggcaccatttttggtttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGCCAGAAACTAAGCTCGAGGCTAAAATGGTTGAAGCAATGCAGCGGAGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA