Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acacaaactcttaagattaacaaagctagaaatgtgctttcatggagaaaggttgtaacagattaaatttgcttaatgcttaatacagttattactacagAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCATGAATGAAAAGGCATTACGACCAAATGGATTACCTAAATCATTAATTCGTTATGATG

Basic information

species Glycine max
transcript GLYMA08G33560.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G33560.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 2
-------------acacaaactcttaagattaacaaagctagaaatgt--gctttcatggaga--aaggttgtaacagattaaatttgc--tt--aatgcttaatacagttattactacagAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCATGAATGAAAAGGCATTACGACCAAATGGATTACCTAAATCATTAATTCGTTATGATG
                |   || | ||  ||   |    || |  | |  | | | || |||   ||| |    ||  |     | | |  ||  |||| | || |  |||    || |||||||||||| ||||| ||||| || ||||||||  |||||||||||||| | |||||||||||||| ||| | ||| |||| ||||||||||
gtgagattctttctttctttctttcaattttgttatctttatagttttctggtataatagaggctaagataactactaaccctttcttcaattgaaatgttcaacatggtt---tctgcagAATGCAGGTCGAGGTCAGCAAATATACAGAAGGTGTGAATGAAAAGGCAGTTCGACCAAATGGATTGCCTCAGTCACTAATCCGTTATGATG

upper sequence: GLYMA08G33560.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S174_62V6.2 (Physcomitrella patens), 3'ss of exon 1
acacaaactcttaag-----attaacaaagct---agaaatgtgctttcatggagaaaggttgtaacagattaaatttgcttaatgcttaatacagttat--tactacagAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCATGAATGAAAAGGCATTACGACCAAATGGATTACCTAAATCATTAATTCGTTATGATG
  ||      ||| |      ||    ||      |  ||  |  ||    ||  |   | |  || |  |      | |||||||      || |||    ||| |||||||||||||||| |||||||||||||| || ||    || |    |||   ||| || || ||  | ||  | ||  | || ||||| || |
gtacgtttctttacgcaatggttgttgaactcttcaacaaaatatttcagcggccacgaggtccaa-atctgctgcctacttaatgacgtgcacggttgcggtacaacagAATGCAGGTTGAAGTGAGCAAGTACACGGAGGGTGCTAAAGCCGTGGCTCGACGTCCCAACGGCCTGCCCGAGTCGCTGATCCGTTACGACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207745580|gb|GD716396.1|GD716396
EST:     ACTGTCACCCCCATCAAAGATGACCATGGCAATACTATCAAATTCATTGG                         AATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCA
genomic: ACTGTCACCCCCATCAAAGATGACCATGGCAATACTATCAAATTCATTGGgtcagtccta ... attactacagAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCA
EST: gi|207830345|gb|GD803325.1|GD803325
EST:     ACTGTCACCCCCATCAAAGATGACCATGGCAATACTATCAAATTCATTGG                         AATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCATGAATGAAAAGGCATT
genomic: ACTGTCACCCCCATCAAAGATGACCATGGCAATACTATCAAATTCATTGGgtcagtccta ... attactacagAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCATGAATGAAAAGGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaaggttgtaacagattaaatttgcttaatgcttaatacagttattactacagAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCATGAATGAAAAGGCATTACGACCAAATGGATTACCTAAATCATTAATTCGTTATGATG
                attaaatttgcttaat  TA-rich tract