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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttaaatcaatgagaaattaatggtacttctacaaattcttagtttcataaatagtcatttattgaatactaaattatagtctgctcaaaatatggcagACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCTAAG

Basic information

species Glycine max
transcript GLYMA08G32090.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411154|gb|EV280965.1|EV280965
EST:     AGGAAAATAAAGTAGCTGAAAGTAGTTTTATTGTAATTATGCTATCAAAG                         ACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCT
genomic: AGGAAAATAAAGTAGCTGAAAGTAGTTTTATTGTAATTATGCTATCAAAGgtgaaaattt ... aatatggcagACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCT
EST: gi|193463621|gb|FK426929.1|FK426929
EST:     AGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATTATGTTATCAAAG                         ACTAAGAGTTCAT
genomic: AGGAAAATAAAGTAGCTGAAAGTAGTTTTATTGTAATTATGCTATCAAAGgtgaaaattt ... aatatggcagACTAAGAGTTCAT
EST: gi|151408744|gb|EV278552.1|EV278552
EST:     AGGAAAATAAAGTAGCTGAAAGTAGTTTTATTGTAATTATGCTATCAAAG                         ACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCT
genomic: AGGAAAATAAAGTAGCTGAAAGTAGTTTTATTGTAATTATGCTATCAAAGgtgaaaattt ... aatatggcagACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCT
EST: gi|208103169|gb|GD901047.1|GD901047
EST:     AGGAAAATAAAGTAGCTGAAAGTAGTTTTATTGTAATTATGCTATCAAAG                         ACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCT
genomic: AGGAAAATAAAGTAGCTGAAAGTAGTTTTATTGTAATTATGCTATCAAAGgtgaaaattt ... aatatggcagACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCT
EST: gi|207766428|gb|GD736516.1|GD736516
EST:     AGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATTATGTTATCAAAG                         ACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGC
genomic: AGGAAAATAAAGTAGCTGAAAGTAGTTTTATTGTAATTATGCTATCAAAGgtgaaaattt ... aatatggcagACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcataaatagtcatttattgaatactaaattatagtctgctcaaaatatggcagACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCTAAG
                       tactaaa  putative branch site (score: 1)
     aaatagtcatttattg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agttaaatcaatgagaaattaatggtacttctacaaattcttagtttcataaatagtcatttattgaatactaaattatagtctgctcaaaatatggcagACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCTAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - caatgag
- - - - - - - - - - - - - -cttctac