1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgattgtttccagtttccattactttattactttcttttctgctatgctgtcttgatgtgtcaaatttaagaatagagaaaatctgtcttgtctttctctatggtattcatgggtgaagtgttttttttttccttttctttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAGGATAACAAAGTTGAATCAAAGGAAACTAAAGGAGCCACCCTCAACGAG
species | Glycine max |
transcript | GLYMA08G28320.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAG GTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAEST: gi|27808906|gb|CB063328.1|CB063328
genomic: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGgtgattgttt ... ttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAA
EST: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAG GTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAEST: gi|208325012|gb|GE118330.1|GE118330
genomic: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGgtgattgttt ... ttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAA
EST: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAG GTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAEST: gi|7283962|gb|AW596563.1|AW596563
genomic: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGgtgattgttt ... ttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAA
EST: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAG GTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAEST: gi|151409158|gb|EV278966.1|EV278966
genomic: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGgtgattgttt ... ttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAA
EST: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAG GTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAEST: gi|17021807|gb|BM092841.1|BM092841
genomic: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGgtgattgttt ... ttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAA
EST: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAG GTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAEST: gi|298197751|gb|HO039290.1|HO039290
genomic: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGgtgattgttt ... ttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAA
EST: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAG GTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAEST: gi|151399665|gb|EV269536.1|EV269536
genomic: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGgtgattgttt ... ttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAA
EST: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAG GTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAEST: gi|213619549|gb|DB957250.1|DB957250
genomic: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGgtgattgttt ... ttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAA
EST: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAG GTACAGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAEST: gi|17154077|gb|BM144010.1|BM144010
genomic: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGgtgattgttt ... ttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAA
EST: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAG GTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAEST: gi|15815223|gb|BI787498.1|BI787498
genomic: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGgtgattgttt ... ttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAA
EST: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAG GTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAEST: gi|7458614|gb|AW666064.1|AW666064
genomic: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGgtgattgttt ... ttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAA
EST: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAG GTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAA
genomic: AGGAACAAAGAGAAGCTATTGGTCACTTGCTCTAGGCGCATCAATTACAGgtgattgttt ... ttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAA
ttctctatggtattcatgggtgaagtgttttttttttccttttctttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAGGATAACAAAGTTGAATCAAAGGAAACTAAAGGAGCCACCCTCAACGAG
tgttttttttttcctt CT-rich tract
ttttttttttcctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattgtttccagtttccattactttattactttcttttctgctatgctgtcttgatgtgtcaaatttaagaatagagaaaatctgtcttgtctttctctatggtattcatgggtgaagtgttttttttttccttttctttttctatagGTACCGGCATTTGATGTTGAATTTGGTCACACTTTTGCCTCATTGTAAGAAGGATAACAAAGTTGAATCAAAGGAAACTAAAGGAGCCACCCTCAACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG