1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atttaaagaatactttagtcttagatccccttacaatatgggaactgtactccatataaattatatattataactgtttccaatctacctcaaatttcagTATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATTCAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTAT
species | Glycine max |
transcript | GLYMA08G27730.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAGGAACTGTATGTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTG TATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATTEST: gi|192305342|gb|FG994024.1|FG994024
genomic: ATAGGAACTGTATGTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTGgtatgtctct ... caaatttcagTATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATT
EST: ATAGGAACTGTATGTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTG TATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATTEST: gi|192302111|gb|FG995231.1|FG995231
genomic: ATAGGAACTGTATGTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTGgtatgtctct ... caaatttcagTATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATT
EST: ATAGGAACTGTATGTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTG TATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATTEST: gi|8403536|gb|BE059170.1|BE059170
genomic: ATAGGAACTGTATGTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTGgtatgtctct ... caaatttcagTATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATT
EST: ATAGGAACTGTATGTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTG TATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATT
genomic: ATAGGAACTGTATGTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTGgtatgtctct ... caaatttcagTATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATT
tgtactccatataaattatatattataactgtttccaatctacctcaaatttcagTATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATTCAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTAT
ttataac putative branch site (score: 2)
tctacctc putative PPT
atataaattatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttaaagaatactttagtcttagatccccttacaatatgggaactgtactccatataaattatatattataactgtttccaatctacctcaaatttcagTATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATTCAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTAT
- - - - - - - - - - - - -tcccctt
- - - - - - - - - - - - - - - - - - - - - -actgtac