1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cttgagtttacaaaatctatgttacctcgtgctcagtcttgttcattaattatacttgtcatttcttttcccccttttcttttttcaaaacatgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATACGACTTTATGAAGTCATAGAAACTCCAACTGACATATATTTTGTCATGGA
species | Glycine max |
transcript | GLYMA08G26180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGATTCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATACEST: gi|18040286|gb|BM308580.1|BM308580
genomic: CAAGATTCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatattg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATAC
EST: CAAGATTCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATACEST: gi|208079704|gb|GD873722.1|GD873722
genomic: CAAGATTCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatattg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATAC
EST: CAAGATTCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATACEST: gi|192305535|gb|FG998319.1|FG998319
genomic: CAAGATTCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatattg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATAC
EST: CAAGATTCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATACEST: gi|209726300|gb|BW659613.1|BW659613
genomic: CAAGATTCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatattg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATAC
EST: CAAGATTCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATACEST: gi|207785838|gb|GD755235.1|GD755235
genomic: CAAGATTCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatattg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATAC
EST: CAAGATTCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAG TGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATAC
genomic: CAAGATTCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGgtttatattg ... catgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATAC
ttaattatacttgtcatttcttttcccccttttcttttttcaaaacatgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATACGACTTTATGAAGTCATAGAAACTCCAACTGACATATATTTTGTCATGGA
cattaat putative branch site (score: 3)
tttcttttcccccttt putative PPT
ttttcttttttcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgagtttacaaaatctatgttacctcgtgctcagtcttgttcattaattatacttgtcatttcttttcccccttttcttttttcaaaacatgttgcagTGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATACGACTTTATGAAGTCATAGAAACTCCAACTGACATATATTTTGTCATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - caaaatc
- - - - - - - - - -tgttacc
- - - - - - - - - - - - - -cgtgctc
- - - - - - - - - - - - - - - - - - -cttgttc