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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatgcaatgtttagttctgaaaacacacgtcatcctaattaataaaacaggatcaaaaccaagatcaattgtgctgatttttcctttactcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATTACAAAGATTACTCCATCCACTAGAGTTGCACTTCGCAACGACAGTTATG

Basic information

species Glycine max
transcript GLYMA08G24000.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os06g39870.1 (Oryza sativa), 3'ss of exon 2
ttatg-caatgtttagttctgaaaacacacgtcatcctaattaataaaacaggatcaaaaccaagatcaattgtgctgatttttcctttactcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATTACAAAGATTACTCCATCCACTAGAGTTGCACTTCGCAACGACAGTTATG
  | |  |  || | | | | |  | |   |  ||  | | ||||   |    |        ||       |||| | |||  ||  || |  |  ||||||| |||||||||||||||||||| |||||| | || ||||||||||| ||||||||| |  | || || || |||||||| ||||| || ||||| ||| 
-aacgatatcgtgtgggtattatgagagcagaaatttttagtaattctatcaaacatttggtaaatctttctgtgttaattgatcaattgcaatctttcagGTGCACCCAGAAGGAAAATATGTTGTTGATGTCGATAAAAGTATTGATATTACAAAGCTCTCGCCTTCAACAAGAGTTGCTCTTCGAAATGACAGCTATA

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 2
-ttatgcaatgtttagttctgaaaacacacgtcatcctaattaataaaacaggatcaaaaccaagatcaattgtgctg--atttttcctttactcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATTACAAAGATTACTCCATCCACTAGAGTTGCACTTCGCAACGACAGTTATG
  | ||  |  ||    | ||         | | |  |  | |   |||       |||     | | |   |||||   |  ||  |  ||   || ||||||| || |||||||| |||||||| || |||||||| ||||| ||||| ||||||||||| || || || || |||||||| ||||| || || || ||| 
gatctgtcacattgtcatttggttctgttagccctttttgtaatggaaatc---ctaaatttctgtttaccagtgctattaacttctcaatataattattcagGTACATCCAGAAGGCAAATATGTGGTGGATATTGATAAAAGCATTGATATTACAAAGATCACACCTTCAACAAGAGTTGCTCTTCGAAATGATAGCTATA

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G19990.1 (Arabidopsis thaliana), 3'ss of exon 2
ttatgcaatgtttagttctgaaaacacacgtcatcctaattaataaaacaggatcaaaaccaagatcaattgtgctgatttttcctttactcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATTACAAAGATTACTCCATCCACTAGAGTTGCACTTCGCAACGACAGTTATG
                         |    || |  | ||||  |     | ||    || || ||   |     | |   || |  | |  || | ||||| || ||||| || || ||||| |||||||||||||||||||| |||||||| || || |||||||| || |||||||| ||||| || || || ||||
-----------------------gtatgaatcttttttattatcatgtttgtatttctacgaacatagttgtcagtaaggcttacactcccattttccagGTTCATCCAGAGGGGAAGTATGTTGTTGATATTGACAAAAGTATAGACATTACGAAAATCACTCCATCAACGAGAGTTGCTCTTCGTAATGATAGCTATG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G20000.1 (Arabidopsis thaliana), 3'ss of exon 2
ttatgcaatgtttagttctgaaaacacacgtcatcctaattaataaaacaggatcaaaaccaagatcaattgtgctgatttttcctttactcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATTACAAAGATTACTCCATCCACTAGAGTTGCACTTCGCAACGACAGTTATG
 |||| |||||||   ||  |  |   |  |     |  ||  | ||       |||    | || || |  |   || |  | |||| |  |  ||||||| || ||||| || || ||||| || ||||||||||||||||| ||||| || ||  | |||||||| || |||||||| || || || || || ||||
gtatg-aatgtttttatcgtattatctagat-----tggtttttgaattgtttgcaatcatatgaacattgata--gaataatactttcccatgtttcagGTTCATCCAGAGGGGAAGTATGTTGTCGATATTGACAAAAGTATAGACATAACGAAACTCACTCCATCAACGAGAGTTGCTCTCCGTAATGATAGCTATG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 3'ss of exon 2
---ttatgcaatgtttagttctgaaaacacacgtcatcctaattaataaaacaggatcaaaaccaagatcaattgtgctgatttttcctttactcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATTACAAAGATTACTCCATCCACTAGAGTTGCACTTCGCAACGACAGTTATG
    | ||    | |   || || | |   ||   ||   ||  | |  |      ||    |  |  || || ||  |     ||| ||| ||  | ||||||| || |||||||| || ||||| || ||||||||||| |  || || || |||||||| || ||||| |||||||||||  | || || || || ||||
gttgtctgtgtgggtacattttgtaga---acccgatagcaaacagtgtatggttttcttgtctcatttctatggttattcaccttcttttccttgtgttcagGTACATCCAGAAGGGAAGTATGTTGTAGATATTGACAAGAACATAGATATCACAAAGATCACACCATCAACTAGAGTTGCTTTACGGAATGATAGCTATG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ28638 (Selaginella moellendorffii), 3'ss of exon 2
ttatgcaatgtttagttctgaaaacacacgtcatcctaattaataaaacaggatcaaaaccaagatcaattgtgctgatttttcctttactcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATTACAAAGATTACTCCATCCACTAGAGTTGCACTTCGCAACGACAGTTATG
                           | || ||  |  ||  |    |    |   |    |||      ||  |  ||| | |||       ||| |||| |||||||||||||| |||||||| ||| ||||||| || || ||||| |  ||||| |||||  ||||| ||||||| ||||| ||||| || ||||
-------------------------gtatgtaattttt-tttctcctcctttctggcactttaga------gtatttttttcttcttggtggaactttagGTGCACCCAGAAGGAAAGTATGTCGTAGATGTTGACAAGAGCATCGACATGAGCAAGATCACTCCCACCACTCGAGTTGCTCTTCGAAACGATAGCTATG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ20576 (Selaginella moellendorffii), 3'ss of exon 2
ttatgcaatgtttagttctgaaaacacacgtcatcctaattaataaaacaggatcaaaaccaagatcaattgtgctgatttttcctttactcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATTACAAAGATTACTCCATCCACTAGAGTTGCACTTCGCAACGACAGTTATG
                           | || ||  |  ||  |    |    |   |    |||      ||  |  ||| | |||       ||| |||| |||||||||||||| |||||||| ||| ||||||| || || ||||| |  ||||| |||||  ||||| ||||||| ||||| ||||| || ||||
-------------------------gtatgtaattttt-tttctcctcccttctggcactttaga------gtattattttcttcttggtggaactttagGTGCACCCAGAAGGAAAGTATGTCGTAGATGTTGACAAGAGCATCGACATGAGCAAGATCACTCCCACCACTCGAGTTGCTCTTCGAAACGATAGCTATG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ04162 (Selaginella moellendorffii), 3'ss of exon 1
ttatgcaatgtttagttctgaaaacacacgtcatcctaattaataaaacaggatcaaaaccaagatcaattgtgctgatttttcctttactcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATTACAAAGATTACTCCATCCACTAGAGTTGCACTTCGCAACGACAGTTATG-
                             || ||  |  ||  |    |    |   |    |||      ||  |  ||| | |||       ||| | || |||||||||||||| |||||||| ||| ||||||| || || ||||| |  ||||| |||||  ||||| ||||||| ||||| ||||| || |||| 
-----------------------------gtaattttt-tttctcctcctttctggcactttaga------gtatttttttcttcttggtggaactttaagTGCACCCAGAAGGAAAGTATGTCGTAGATGTTGACAAGAGCATCGACATGAGCAAGATCACTCCCACCACTCGAGTTGCTCTTCGAAACGATAGCTATGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593215|gb|DB969901.1|DB969901
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|17401413|gb|BM178195.1|BM178195
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|120493760|gb|EH221927.1|EH221927
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|16346043|gb|BI971638.1|BI971638
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAACTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|16281730|gb|BI944638.1|BI944638
EST:     GTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: GTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|254349061|gb|GR860333.1|GR860333
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|213596302|gb|DB960231.1|DB960231
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|298171598|gb|HO021190.1|HO021190
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|18848674|gb|BM567798.1|BM567798
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|9986673|gb|BE660781.1|BE660781
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|15661777|gb|BI699148.1|BI699148
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|192327448|gb|FK019605.1|FK019605
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|37995461|gb|CF807050.1|CF807050
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|120533815|gb|EH261948.1|EH261948
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|18040394|gb|BM308688.1|BM308688
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|26047693|gb|CA784406.1|CA784406
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|7028501|gb|AW458284.1|AW458284
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|21594964|gb|BQ610324.1|BQ610324
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|15813018|gb|BI785293.1|BI785293
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|254323845|gb|GR840378.1|GR840378
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|33390556|gb|CA853751.1|CA853751
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAG
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAG
EST: gi|26048149|gb|CA784723.1|CA784723
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|37994568|gb|CF806272.1|CF806272
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|213611680|gb|DB969068.1|DB969068
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|17964755|gb|BM271485.1|BM271485
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|16281214|gb|BI944372.1|BI944372
EST:     GAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: GAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|6455002|gb|AW185685.1|AW185685
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|209706924|gb|BW661509.1|BW661509
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|151411634|gb|EV281445.1|EV281445
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|21678100|gb|BQ630451.1|BQ630451
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|254325633|gb|GR838514.1|GR838514
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|15662663|gb|BI700034.1|BI700034
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|209717887|gb|BW666080.1|BW666080
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|15813544|gb|BI785819.1|BI785819
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|7684948|gb|AW755596.1|AW755596
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|7686556|gb|AW757204.1|AW757204
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|18734930|gb|BM528466.1|BM528466
EST:     GTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCC-CCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: GTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|120531685|gb|EH259818.1|EH259818
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|6134230|gb|AW132623.1|AW132623
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|7145717|gb|AW507639.1|AW507639
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|21479815|gb|BQ576498.1|BQ576498
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGA
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGA
EST: gi|11413925|gb|BF426000.1|BF426000
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
EST: gi|151394633|gb|EV264504.1|EV264504
EST:     ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG                         GTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT
genomic: ATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... tcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacaggatcaaaaccaagatcaattgtgctgatttttcctttactcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATTACAAAGATTACTCCATCCACTAGAGTTGCACTTCGCAACGACAGTTATG
                           tgctgat  putative branch site (score: 3)
                             ctgatttttcctttac  CT-rich tract
                              tgattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttatgcaatgtttagttctgaaaacacacgtcatcctaattaataaaacaggatcaaaaccaagatcaattgtgctgatttttcctttactcttcttcagGTCCACCCAGAAGGAAAATATGTCGTTGATATTGACAAAAGTATTGACATTACAAAGATTACTCCATCCACTAGAGTTGCACTTCGCAACGACAGTTATG

-tatgcaa
- - - - - - - - - - - aacacac
- - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - caaaacc