1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaaaacatgaaatgaaaacagaagtatatgattcttttggctaaaaatatacgagataaagggtcctaatatatggatggtattgttggtggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGAAGTTGGCCGAAATGCTCTCAGTGGTGTGTGAGAATTACAACACTTTGA
species | Glycine max |
transcript | GLYMA08G23380.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGEST: gi|254318274|gb|GR832442.1|GR832442
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGEST: gi|209709505|gb|BW681208.1|BW681208
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG TCTACTAGTGACTTGGAGGAGGAACTGAAGCGAGTGAGTGCAGAAAACAAGEST: gi|254342046|gb|GR853183.1|GR853183
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGEST: gi|213591513|gb|DB959943.1|DB959943
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGEST: gi|192300003|gb|FG991835.1|FG991835
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGEST: gi|37995904|gb|CF807493.1|CF807493
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGEST: gi|213597388|gb|DB964405.1|DB964405
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGEST: gi|298168953|gb|HO020257.1|HO020257
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGEST: gi|8283991|gb|BE021550.1|BE021550
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGEST: gi|213594145|gb|DB963770.1|DB963770
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGEST: gi|209706888|gb|BW661498.1|BW661498
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGEST: gi|15200350|gb|BI424303.1|BI424303
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGEST: gi|11411497|gb|BF423508.1|BF423508
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
aatatacgagataaagggtcctaatatatggatggtattgttggtggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGAAGTTGGCCGAAATGCTCTCAGTGGTGTGTGAGAATTACAACACTTTGA
tcctaat putative branch site (score: 2)
taatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaacatgaaatgaaaacagaagtatatgattcttttggctaaaaatatacgagataaagggtcctaatatatggatggtattgttggtggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGAAGTTGGCCGAAATGCTCTCAGTGGTGTGTGAGAATTACAACACTTTGA
aaaaaca
- - - - -aaatgaaa
- - - - - - - - - - - - - - - - -cttttgg
- - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgttgg