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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaacatgaaatgaaaacagaagtatatgattcttttggctaaaaatatacgagataaagggtcctaatatatggatggtattgttggtggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGAAGTTGGCCGAAATGCTCTCAGTGGTGTGTGAGAATTACAACACTTTGA

Basic information

species Glycine max
transcript GLYMA08G23380.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23380.3 (Glycine max), 3'ss of exon 2
lower sequence: Vv09s0018g00240.t01 (Vitis vinifera), 3'ss of exon 2
-aaaaacatgaa--atgaa--aacagaagtatatgattcttttggctaaaaatatacgagataaagggtcctaatatatggatggtattgttggtggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGAAGTTGGCCGAAATGCTCTCAGTGGTGTGTGAGAATTACAACACTTTGA---
  ||| |||  |  ||| |  || | ||| | |  | |  ||    |||   ||   | | |   || | || |      | ||   |    | |  ||| |      ||  |||   | | |||| || |||| |  ||||  |||||||||| |||| |  | ||||||||  ||||| ||||||||||||||||| ||||||   
tcaaatcatagattatggaggaagaaaagaaaagaagttgttcacgtaattgtaattggggt---ggtttctga-----agctgtgttccccgttttcatgtacacagACAGGTGTTCTTGTGGAGAAATTGAACCAAGTGAACGCAGAAAACAGGAAGCTAACGGAAATGCTAACAGTGATGTGTGAGAATTACAACGCTTTGAGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209706888|gb|BW661498.1|BW661498
EST:     AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG                         TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|213597388|gb|DB964405.1|DB964405
EST:     AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG                         TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|254342046|gb|GR853183.1|GR853183
EST:     AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG                         TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|37995904|gb|CF807493.1|CF807493
EST:     AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG                         TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|213594145|gb|DB963770.1|DB963770
EST:     AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG                         TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|15200350|gb|BI424303.1|BI424303
EST:     AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG                         TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|213591513|gb|DB959943.1|DB959943
EST:     AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG                         TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|8283991|gb|BE021550.1|BE021550
EST:     AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG                         TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|33389342|gb|CA852549.1|CA852549
EST:     AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG                         TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|192300003|gb|FG991835.1|FG991835
EST:     AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG                         TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|298168953|gb|HO020257.1|HO020257
EST:     AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG                         TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|254318274|gb|GR832442.1|GR832442
EST:     AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG                         TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|11411497|gb|BF423508.1|BF423508
EST:     AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG                         TCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG
EST: gi|209709505|gb|BW681208.1|BW681208
EST:     AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG                         TCTACTAGTGACTTGGAGGAGGAACTGAAGCGAGTGAGTGCAGAAAACAAG
genomic: AAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAGgttagttgag ... ggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatacgagataaagggtcctaatatatggatggtattgttggtggcatttcagTCTACTAGTGACTTGGAGGAGGAACTGAAGCGGGTGAGTGCAGAAAACAAGAAGTTGGCCGAAATGCTCTCAGTGGTGTGTGAGAATTACAACACTTTGA
                  tcctaat  putative branch site (score: 2)
                     taatatat  TA-rich tract