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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagggtatatcaaatcaatctttcaacagtgaattattattttcttcttcatgttttgataatgttgagtaatctgtaacttgaactttttggtcactgtgattaatatgtgtagGATGTCAAGGATAATCCTGTTATGGTTTACATGAAAGGTGTGCCTGATTTTCCACAATGTGGATTTAGTTCGCTTGCTGTAAGAGTTTTAAAACACTATG

Basic information

species Glycine max
transcript GLYMA08G22430.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22430.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G15660.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaagggtatatcaaatcaatctttcaacagtgaattattattttcttcttcatgt-tttgataatgttgagtaatctgtaacttgaactttttggtcactgtgattaatatgtgtagGATGTCAAGGATAATCCTGTTATGGTTTACATGAAAGGTGTGCCTGATTTTCCACAATGTGGATTTAGTTCGCTTGCTGTAAGAGTTTTAAAACACTATG
      ||| |    | |  ||| |  |     | ||     ||||||  | | || |||| ||||| ||                    |||| |     ||| ||     ||||||||||| |||||||||||||||||| | |||||||||||||| ||||| | ||| || ||||| ||||| || || || || ||||||||  | || ||| 
------gtacactccagct-tctctagatttgaagttgaatgtttctttgttaggtgtttgctaatgctg--------------------ttttagctttggtggtt-----gtgtagGATGTGAAGGATAATCCTGTTATGATCTACATGAAAGGTGTCCCTGAATCTCCTCAGTGTGGGTTTAGCTCACTAGCCGTCAGAGTTTTGCAGCAATATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23732715|gb|BU764528.1|BU764528
EST:     CTAATAAGCTTGAGAATTCTGGCATTTCTTTGTCAAATGTTATTGAGCAG                         GATGTCAAGGATAATCCTGTTATGGTTTACATGAAAGGTGTGCCTGATTTT
genomic: CTAATAAGCTTGAGAATTCTGGCATTTCTTTGTCAAATGTTATTGAGCAGgtaagggtat ... atatgtgtagGATGTCAAGGATAATCCTGTTATGGTTTACATGAAAGGTGTGCCTGATTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgttgagtaatctgtaacttgaactttttggtcactgtgattaatatgtgtagGATGTCAAGGATAATCCTGTTATGGTTTACATGAAAGGTGTGCCTGATTTTCCACAATGTGGATTTAGTTCGCTTGCTGTAAGAGTTTTAAAACACTATG
                                        gattaat  putative branch site (score: 3)
                                       tgattaatat  TA-rich tract