1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtacctaccctaaactaaagttaccgtttttacaattactttactttttaaattttttatgttgttacttgttatgttgagttgaggtaacttttttgttttgtttttgtgagttgttcagATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAATAGGAAGTTGACTGCCATGAACAAGTTGCTCATGGAGGAGAATGATAGGTTG
species | Glycine max |
transcript | GLYMA08G21610.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAG ATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAATAGEST: gi|207740758|gb|GD714794.1|GD714794
genomic: CTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAGgtacctaccc ... agttgttcagATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAATAG
EST: CTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAG ATGTAGAGAGAGGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAAEST: gi|207843631|gb|GD813858.1|GD813858
genomic: CTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAGgtacctaccc ... agttgttcagATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAA
EST: CTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAG ATGTAGAGAGAAGCAGAGGAAGGNGTCGTCGCGGCTGCAAGCTGTAAAATA
genomic: CTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAACAGAAGgtacctaccc ... agttgttcagATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAA-TA
acttgttatgttgagttgaggtaacttttttgttttgtttttgtgagttgttcagATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAATAGGAAGTTGACTGCCATGAACAAGTTGCTCATGGAGGAGAATGATAGGTTG
aggtaac putative branch site (score: 3)
taacttttttgttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctaccctaaactaaagttaccgtttttacaattactttactttttaaattttttatgttgttacttgttatgttgagttgaggtaacttttttgttttgtttttgtgagttgttcagATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAATAGGAAGTTGACTGCCATGAACAAGTTGCTCATGGAGGAGAATGATAGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA