1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caaagttttacagtaaactttccttgttatcttttatttataccgattagctttatatatatatatattaatgtttttgtgagaatgaaattttttgcagAGATGAAGTTATCTCATATTGGCTCTTCCCAATGCTGTTCTGGTCAAAGAGATTCCTGTGCTGGTGGAATTCAAAACAAGGAACAGGAAGAGAAATCCAA
species | Glycine max |
transcript | GLYMA08G21460.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGGGGCCTCCTTGCAG AGATGAAGTTATCTCATATTGGCTCTTCCCAATGCTGTTCTGGTCAAAGAGEST: gi|192301468|gb|FG994092.1|FG994092
genomic: TGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGGGGCCTCCTTGCAGgtaatattct ... ttttttgcagAGATGAAGTTATCTCATATTGGCTCTTCCCAATGCTGTTCTGGTCAAAGAG
EST: TGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGGGGCCTCCTTGCAG AGATGAAGTTATCTCATATTGGCTCTTCCCAATGCTGTTCTGGTCAAAGAGEST: gi|192300225|gb|FG989347.1|FG989347
genomic: TGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGGGGCCTCCTTGCAGgtaatattct ... ttttttgcagAGATGAAGTTATCTCATATTGGCTCTTCCCAATGCTGTTCTGGTCAAAGAG
EST: TGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGGGGCCTCCTTGCAG AGATGAAGTTATCTCATATTGGCTCTTCCCAATGCTGTTCTGGTCAAAGAG
genomic: TGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGGGGCCTCCTTGCAGgtaatattct ... ttttttgcagAGATGAAGTTATCTCATATTGGCTCTTCCCAATGCTGTTCTGGTCAAAGAG
attagctttatatatatatatattaatgtttttgtgagaatgaaattttttgcagAGATGAAGTTATCTCATATTGGCTCTTCCCAATGCTGTTCTGGTCAAAGAGATTCCTGTGCTGGTGGAATTCAAAACAAGGAACAGGAAGAGAAATCCAA
tattaat putative branch site (score: 2)
ttttttgc putative PPT
tttatatatatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaagttttacagtaaactttccttgttatcttttatttataccgattagctttatatatatatatattaatgtttttgtgagaatgaaattttttgcagAGATGAAGTTATCTCATATTGGCTCTTCCCAATGCTGTTCTGGTCAAAGAGATTCCTGTGCTGGTGGAATTCAAAACAAGGAACAGGAAGAGAAATCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - -ttccttg