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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattcaaattcccgaaaggggggcatctgttctgcctattactatttaagttcactgtgtgagatggtgctaactagcatgtgactggttgtgcaattcctatgtatgtgttaatgtgtcgtataataaatggcagGTATGGATTTGCAATTTGAGGTGGAGGAGGTTGAAGCTTTTGTGAAACAGCCTGATGGTTCTGTTTTCAGTTGGTATGAGCGTTTTCAGTGCTACTGTCA

Basic information

species Glycine max
transcript GLYMA08G20980.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20980.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv09s0002g02590.t01 (Vitis vinifera), 3'ss of exon 2
------------------------------gtacattcaaattcccgaaaggggggcatctgttctgcctattactatttaagttcactgtgtgagatggtgctaactagcatgtgactggttgtgcaattcctatgtatgtgttaatgtgt-cgtataataaatggcagGTATGGATTTGCAATTTGAGGTGGAGGAGGTTGAAGCTTTTGTGAAACAGCCTGATGGTTCTGTTTTCAGTTGGTATGAGCGTTTTCAGTGCTACTGTCA
                              |    ||    | || |         | |   |  ||  | ||  || | || ||   ||  | | |   |||| | |   |    | |  | ||    | |  ||    ||  |||    | |  |   |   |  |||| |||||||| |||||||||  ||| ||||||||||||||||||| |||||| ||||||||  | || |||||||  ||||| ||||  |||| |  |||
gtatactatgctgttttcattttatcttttggtttttattgtccctggtttaaaatccttactaatggattttcataataaaatttcttgattaaaa--atgctgatttttac---aattatggtttcttccacataggagtaataactcatactcactttcgctctcagGAATGGATTTACAATTTGAGTGGGATGAGGTTGAAGCTTTTGTGAGACAGCCGGATGGTTCATTGTTTAGTTGGTGGGAGCGATTTCGTTGCTTCAATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgactggttgtgcaattcctatgtatgtgttaatgtgtcgtataataaatggcagGTATGGATTTGCAATTTGAGGTGGAGGAGGTTGAAGCTTTTGTGAAACAGCCTGATGGTTCTGTTTTCAGTTGGTATGAGCGTTTTCAGTGCTACTGTCA
                           tgttaat  putative branch site (score: 3)
                                        tataataaat  TA-rich tract