1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttcgcttttttttctcttacatttcatttttcgctgtttttgtttatgttgctgaggaaatgttgatgcaagttttaagttgctgatttctgtgtggcagTTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTAGTTCTATCATTGATGATGGCCTCATCCACAAG
species | Glycine max |
transcript | GLYMA08G20700.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATTCTTCTACCTTCGACGACATTCTCACCCTCGCCGAGGATTCTCCAT TTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTAEST: gi|151396695|gb|EV266568.1|EV266568
genomic: ACATTCTTCTACCTTCGACGACATTCTCACCCTCGCCGAGGATTCTCCATgttcgctttt ... tgtgtggcagTTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTA
EST: ACATTCTTCTACCTTCGACGACATTCTCACCCTCGCCGAGGATTCTCCAT TTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTAEST: gi|213616508|gb|DB965555.1|DB965555
genomic: ACATTCTTCTACCTTCGACGACATTCTCACCCTCGCCGAGGATTCTCCATgttcgctttt ... tgtgtggcagTTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTA
EST: ACATTCTTCTACCTTCGACGACATTCTCACCCTCGCCGAGGATTCTCCAT TTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTAEST: gi|192329211|gb|FK020130.1|FK020130
genomic: ACATTCTTCTACCTTCGACGACATTCTCACCCTCGCCGAGGATTCTCCATgttcgctttt ... tgtgtggcagTTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTA
EST: ACATTCTTCTACCTTCGACGACATTCTCACCCTCGCCGAGGATTCTCCAT TTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTA
genomic: ACATTCTTCTACCTTCGACGACATTCTCACCCTCGCCGAGGATTCTCCATgttcgctttt ... tgtgtggcagTTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTA
atgttgctgaggaaatgttgatgcaagttttaagttgctgatttctgtgtggcagTTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTAGTTCTATCATTGATGATGGCCTCATCCACAAG
tgctgat putative branch site (score: 3)
tttctgt CT-rich tract
aagttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgcttttttttctcttacatttcatttttcgctgtttttgtttatgttgctgaggaaatgttgatgcaagttttaagttgctgatttctgtgtggcagTTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTAGTTCTATCATTGATGATGGCCTCATCCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT