1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgatttgtaattatctctcatagaaaaataccaagcaattagcttatttgcctcacattcttttgaatattcacactattgtgggtttacattggagcagCCCACTCTAATTTTATGGGGAGAGCAAGATCAGATATTCCCTCTGGAGTTAGGACACAGATTAAAAAG
species | Glycine max |
transcript | GLYMA08G19060.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atttgcctcacattcttttgaatattcacactattgtgggtttacattggagcagCCCACTCTAATTTTATGGGGAGAGCAAGATCAGATATTCCCTCTGGAGTTAGGACACAGATTAAAAAG
gcctcac putative branch site (score: 3)
attcttttgaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatttgtaattatctctcatagaaaaataccaagcaattagcttatttgcctcacattcttttgaatattcacactattgtgggtttacattggagcagCCCACTCTAATTTTATGGGGAGAGCAAGATCAGATATTCCCTCTGGAGTTAGGACACAGATTAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
tgatttg
- - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - ccaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtggg