Sequence
atgc intronic sequence ATGC exonic sequence...ccttccgtcattaatcttgcgtaacaaacatagcataagcctctattgctttaatgagatctgtatatatgagaatgctaatattcttttatctgtgcagTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGAAACGCTTGCAGTTATTGGAGGACCTAAAACATCTAGCTTATCCTTGTGACA
Basic information
species | Glycine max |
transcript | GLYMA08G18780.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31456893|gb|CD398921.1|CD398921EST: AGTGCAAGTCTTGGTGCTGATATTAGTGATATGCTAACTTTTCTTAGAAG TCCTCCAACATCCAAACCATAGAAGCAGAAAGTTGGAAGCAGAGAATGAAA
genomic: AGTGCAAGTCTTGGTGCTGATATTAGTGATATGCAAACTTTTCTTAGAAGgtatgcttac ... atctgtgcagTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGAAA
EST:
gi|31310639|gb|CD395842.1|CD395842EST: AGTGCAAGTCTTGGTGCTGATATTAGTGATATGCAAACTTTTCTTAGAAG TCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGAAA
genomic: AGTGCAAGTCTTGGTGCTGATATTAGTGATATGCAAACTTTTCTTAGAAGgtatgcttac ... atctgtgcagTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgctttaatgagatctgtatatatgagaatgctaatattcttttatctgtgcagTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGAAACGCTTGCAGTTATTGGAGGACCTAAAACATCTAGCTTATCCTTGTGACA
tgctaat putative branch site (score: 2)
ttcttttatct CT-rich tract
taatattcttttatct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccttccgtcattaatcttgcgtaacaaacatagcataagcctctattgctttaatgagatctgtatatatgagaatgctaatattcttttatctgtgcagTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGAAACGCTTGCAGTTATTGGAGGACCTAAAACATCTAGCTTATCCTTGTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA