1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaatatatctaagtgttgtcctatttcttttttttttttttttttttgtgtgtgtgttttagttattgagacgatgaaactgtgggtgattgttgttcagTTGTAAGAAATTAGTGGCCGCTAAGAAGCAGATGTCCATACTTCAAGCACCTAACATCCTTGTGATACAGCTAAAG
species | Glycine max |
transcript | GLYMA08G18720.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTTCAGCCTGAGGTTTTAGATGGCAAC-ATGAAGTACAAGTGTGATAG TTGTAAGAAATTAGTGGCCGCTAAGAAGCAGATGTCCATACTTCAAGCACCEST: gi|19052919|gb|BM731586.1|BM731586
genomic: TCTTTCAGCCTGAGGTTTTAGATGGCAACAAT-AAGTACAAGTGTGATAGgtgagtcacc ... tgttgttcagTTGTAAGAAATTAGTGGCCGCTAAGAAGCAGATGTCCATACTTCAAGCACC
EST: TTCTTTCAGCCTGAGGTTTTAGATGGCAACAATAAGTACAAGTGTGATAG TTGTAAGAAATTAGTGGCCGCTAAGAAGCAGATGTCCATACTTCAAGCACC
genomic: TTCTTTCAGCCTGAGGTTTTAGATGGCAACAATAAGTACAAGTGTGATAGgtgagtcacc ... tgttgttcagTTGTAAGAAATTAGTGGCCGCTAAGAAGCAGATGTCCATACTTCAAGCACC
ttgtgtgtgtgttttagttattgagacgatgaaactgtgggtgattgttgttcagTTGTAAGAAATTAGTGGCCGCTAAGAAGCAGATGTCCATACTTCAAGCACCTAACATCCTTGTGATACAGCTAAAG
ttttagttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatatatctaagtgttgtcctatttcttttttttttttttttttttgtgtgtgtgttttagttattgagacgatgaaactgtgggtgattgttgttcagTTGTAAGAAATTAGTGGCCGCTAAGAAGCAGATGTCCATACTTCAAGCACCTAACATCCTTGTGATACAGCTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG