1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tattcaaattatgcagaagacatgacttgcaacaaaaccttatatatctgagaacacttttatctgaatagttgtttctctgactggaaaaatttattagGAAGGATCAAGCAAGAGATATGTGGGTGTTCCGGGCATGAATTCTATATGCAAAGCATTATGCAATGAGAGTG
species | Glycine max |
transcript | GLYMA08G18500.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTTTGCCTCGTTTGATTTTCACACACTTAAATTTAACAACATAGAGCAG GAAGGATCAAGCAAGAGATATGTGGGTGTTCCGGGCATGAATTCTATATGCEST: gi|208300335|gb|GE097650.1|GE097650
genomic: AGTTTGCCTCGTTTGATTTTCACACACTTAAATTTAACAACATAGAGCAGgttgacaagt ... aatttattagGAAGGATCAAGCAAGAGATATGTGGGTGTTCCGGGCATGAATTCTATATGC
EST: AGTTTGCCTCGTTTGATTTTCACACACTTAAATTTAACAACATAGAGCAG GAAGGATCAAGCAAGAGATATGTGGGTGTTCCGGGCATGAATTCTATATGC
genomic: AGTTTGCCTCGTTTGATTTTCACACACTTAAATTTAACAACATAGAGCAGgttgacaagt ... aatttattagGAAGGATCAAGCAAGAGATATGTGGGTGTTCCGGGCATGAATTCTATATGC
atctgagaacacttttatctgaatagttgtttctctgactggaaaaatttattagGAAGGATCAAGCAAGAGATATGTGGGTGTTCCGGGCATGAATTCTATATGCAAAGCATTATGCAATGAGAGTG
ctctgac putative branch site (score: 3)
tggaaaaatttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattcaaattatgcagaagacatgacttgcaacaaaaccttatatatctgagaacacttttatctgaatagttgtttctctgactggaaaaatttattagGAAGGATCAAGCAAGAGATATGTGGGTGTTCCGGGCATGAATTCTATATGCAAAGCATTATGCAATGAGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - ttatgca
- - - - - - - - - -acatgac
- - - - - - - - - - - - - - - - caaaacc