1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttagttgaaggtatagcacatttaattttgttatttcctcgctaatcatactgaaattttgaaagaggatcctaaattttctcaatttctggaaatccagAGAGAGAACTGAAGATGGGACGGAGCTGCATTTTGACCATGGTGCTCCATTTTTCTCGGTTAGCAAGTCTGAAGTTTTACATCTGGTTCAAGAGTGGGAA
species | Glycine max |
transcript | GLYMA08G18500.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTCTCTTTGAGTCAGCTAGAGGCCCTGGTGGACGCATGTCCCAAAGAAG AGAGAGAACTGAAGATGGGACGGAGCTGCATTTTGACCATGGTGCTCCATTEST: gi|209706232|gb|BW656737.1|BW656737
genomic: ACTCTCTTTGAGTCAGCTAGAGGCCCTGGTGGACGCATGTCCCAAAGAAGgttcttttta ... ggaaatccagAGAGAGAACTGAAGATGGGACGGAGCTGCATTTTGACCATGGTGCTCCATT
EST: ACTCTCTTTGAGTCAGCTAGAGGCCCTGGTGGACGCATGTCCCAAAGAAG AGAGAGAACTGAAGATGGGACAGAGAACTGCATTTTGACCATGGTGCTCCA
genomic: ACTCTCTTTGAGTCAGCTAGAGGCCCTGGTGGACGCATGTCCCAAAGAAGgttcttttta ... ggaaatccagAGAGAGAACTGAAGATGGGAC-G-GAGCTGCATTTTGACCATGGTGCTCCA
tcatactgaaattttgaaagaggatcctaaattttctcaatttctggaaatccagAGAGAGAACTGAAGATGGGACGGAGCTGCATTTTGACCATGGTGCTCCATTTTTCTCGGTTAGCAAGTCTGAAGTTTTACATCTGGTTCAAGAGTGGGAA
tcctaaa putative branch site (score: 2)
taaattttctcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagttgaaggtatagcacatttaattttgttatttcctcgctaatcatactgaaattttgaaagaggatcctaaattttctcaatttctggaaatccagAGAGAGAACTGAAGATGGGACGGAGCTGCATTTTGACCATGGTGCTCCATTTTTCTCGGTTAGCAAGTCTGAAGTTTTACATCTGGTTCAAGAGTGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG