Sequence
atgc intronic sequence ATGC exonic sequence...ttaacacaaacaaaaagcgtttttttgcttaactttttgcttcatccaaatattaattgaggaccttagcttaaaatgtttgcaccttgtgtacatgcagGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGTGAAGTTTTAGCCAAACCTAGCATGGGTAGCTGCTATGAGGACACGGGATCTTCAACTCTTC
Basic information
species | Glycine max |
transcript | GLYMA08G18470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192324891|gb|FK015372.1|FK015372EST: AGTTTCGTATCGAAGGACCTCATGGACCTCCTAAAATTTCTTCTTCCAAG GAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGTGAAGTTTTAGCC
genomic: AGTTTCGTATCGAAGGACCTCATGGACCTCCTAAAATTTCTTCTTCCAAGgtatacataa ... gtacatgcagGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGTGAAGTTTTAGCC
EST:
gi|5760558|gb|AI965921.1|AI965921EST: AGTTTCGTATCGAAGGACCTCATGGACCTCCTAAAATTTCTTCTTCCAAG GAAGATAGGGTTTTGTGTAGGGTGTTCTACAAAAACAGTGAAGTTTTAGC
genomic: AGTTTCGTATCGAAGGACCTCATGGACCTCCTAAAATTTCTTCTTCCAAGgtatacataa ... gtacatgcagGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGTGAAGTTTTAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccaaatattaattgaggaccttagcttaaaatgtttgcaccttgtgtacatgcagGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGTGAAGTTTTAGCCAAACCTAGCATGGGTAGCTGCTATGAGGACACGGGATCTTCAACTCTTC
tattaat putative branch site (score: 2)
ttaaaatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttaacacaaacaaaaagcgtttttttgcttaactttttgcttcatccaaatattaattgaggaccttagcttaaaatgtttgcaccttgtgtacatgcagGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGTGAAGTTTTAGCCAAACCTAGCATGGGTAGCTGCTATGAGGACACGGGATCTTCAACTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - cacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacct