1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttaaattctagaactaaaatagttctcattaaaaatattgtgtaagcttctttttgatttgtgactgtcgaggctgatgaaatgaattgcatcctgacagGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATATCAGGTGTCCAG
species | Glycine max |
transcript | GLYMA08G18240.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCG GCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATATEST: gi|17023965|gb|BM094999.1|BM094999
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCGgtaatatttt ... atcctgacagGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATAT
EST: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCG GCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATATEST: gi|7478465|gb|AW666276.1|AW666276
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCGgtaatatttt ... atcctgacagGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATAT
EST: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCG GCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATATEST: gi|209708854|gb|BW673890.1|BW673890
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCGgtaatatttt ... atcctgacagGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATAT
EST: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCG GCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATATEST: gi|213606648|gb|DB959060.1|DB959060
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCGgtaatatttt ... atcctgacagGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATAT
EST: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCG GCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATATEST: gi|23727056|gb|BU761544.1|BU761544
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCGgtaatatttt ... atcctgacagGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATAT
EST: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCG GCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATATEST: gi|193667049|gb|FK612549.1|FK612549
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCGgtaatatttt ... atcctgacagGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATAT
EST: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAACATCG GCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGEST: gi|208147563|gb|GD945384.1|GD945384
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCGgtaatatttt ... atcctgacagGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTG
EST: GCATCCATTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCG GCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATATEST: gi|15663764|gb|BI701135.1|BI701135
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCGgtaatatttt ... atcctgacagGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATAT
EST: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCG GCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATAT
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCGgtaatatttt ... atcctgacagGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATAT
gcttctttttgatttgtgactgtcgaggctgatgaaatgaattgcatcctgacagGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATATCAGGTGTCCAG
ggctgat putative branch site (score: 4)
tttttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaattctagaactaaaatagttctcattaaaaatattgtgtaagcttctttttgatttgtgactgtcgaggctgatgaaatgaattgcatcctgacagGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATATCAGGTGTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatgaa