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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgttattgctcttaactttcaatttggtttaattttttgtttatattaaagagaagggtatggtttgtgtttcaactgatttcgttgtgttgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG

Basic information

species Glycine max
transcript GLYMA08G17810.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G17810.5 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0011g01960.t01 (Vitis vinifera), 3'ss of exon 1
gtattgttattgctcttaactttcaatttggtttaattttttgtttatattaaagagaagggtatggtttgtgtttcaactgatttcgttgtgttgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG
                         |  |  |||| |   | | ||    |  |||||    |||  |   | ||   ||   | |   |||||   |  |||| ||||| ||||||||||||||||| |||||||| ||||| || || || || || ||||| ||| | || || ||||
-----------------------gtaagtaatttattcactagattcacatgcagagactcatattttcgatcttctcacatctctatgtgtgtcacgagacagTCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTCAGGCCAAACATCTCTAGGGATCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12688055|gb|BG154391.1|BG154391
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|15815476|gb|BI787751.1|BI787751
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|19268728|gb|BM884984.1|BM884984
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|4305924|gb|AI443831.1|AI443831
EST:     TTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: TTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|27425474|gb|CA936994.1|CA936994
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|6567102|gb|AW234729.1|AW234729
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|37996790|gb|CF808379.1|CF808379
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|27424967|gb|CA936487.1|CA936487
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|15285795|gb|BI469686.1|BI469686
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|12687912|gb|BG154308.1|BG154308
EST:     GTTTATCATGGGGGATNACGTCAGTATTCGTTTTCTCTCACCACATTTAG                         C
genomic: GTTTATCATGGGGGAT-A-GTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacag-
EST: gi|12687912|gb|BG154308.1|BG154308
EST:     GTTTATCATGGGGGATNACGTCAGTATTCGTTTTCTCTCACCACATTTAG                         C
genomic: GTTTATCATGGGGGAT-A-GTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacag-
EST: gi|298195959|gb|HO044350.1|HO044350
EST:     GGTTTATCATGGGTGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: GGTTTATCATGGG-GGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|15000807|gb|BI321621.1|BI321621
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|7690855|gb|AW758992.1|AW758992
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|13563115|gb|BG551335.1|BG551335
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGTTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|208056326|gb|GD853305.1|GD853305
EST:     TATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: TATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|298192268|gb|HO036350.1|HO036350
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|8283306|gb|BE020867.1|BE020867
EST:     ATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: ATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|27446035|gb|CA953158.1|CA953158
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|24135847|gb|BU926357.1|BU926357
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
EST: gi|17023069|gb|BM094103.1|BM094103
EST:     GGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC
genomic: GGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttat ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaagagaagggtatggtttgtgtttcaactgatttcgttgtgttgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG
                            aactgat  putative branch site (score: 3)