1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctgatatgtggaaaagttcaaatttgtatcttactagtcagccagtgcagcatgcttatgtaactcgaataataattttgttgtgtgttttatttcctagGTTACAGAATCCACCGATTTCAATGAGCTAACAGAGAAGGAACCCTGGCTTTTATCTTCAAAATTGGTTGTGAAACCTGACATGCTATTTGGTAAGCGTG
species | Glycine max |
transcript | GLYMA08G17010.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCACTTTAAGAGACTCTCTGGCCAGGACTTGCCCATCAAGTCCGCACAA GTTACAGAATCCACCGATTTCAATGAGCTAACAGAGAAGGAACCCTGGCTTEST: gi|192323031|gb|FK016762.1|FK016762
genomic: AGCACTTTAAGAGACTCTCTGGCCAGGACTTGCCCATCAAGTCCGCACAAgtaagcattc ... tatttcctagGTTACAGAATCCACCGATTTCAATGAGCTAACAGAGAAGGAACCCTGGCTT
EST: AGCACTTTAAGAGACTCTCTGGCCAGGACTTGCCCATCAAGTCCGCACAA GTTACAGAATCCACCGATTTCAATGAGCTAACAGAGAAGGAACCCTGGCTTEST: gi|192294349|gb|FG987278.1|FG987278
genomic: AGCACTTTAAGAGACTCTCTGGCCAGGACTTGCCCATCAAGTCCGCACAAgtaagcattc ... tatttcctagGTTACAGAATCCACCGATTTCAATGAGCTAACAGAGAAGGAACCCTGGCTT
EST: AGCACTTTAAGAGACTCTCTGGCCAGGACTTGCCCATCAAGTCCGCACAA GTTACAGAATCCACCGATTTCAATGAGCTAACAGGGAAGGAACCCTGGCTT
genomic: AGCACTTTAAGAGACTCTCTGGCCAGGACTTGCCCATCAAGTCCGCACAAgtaagcattc ... tatttcctagGTTACAGAATCCACCGATTTCAATGAGCTAACAGAGAAGGAACCCTGGCTT
tgcagcatgcttatgtaactcgaataataattttgttgtgtgttttatttcctagGTTACAGAATCCACCGATTTCAATGAGCTAACAGAGAAGGAACCCTGGCTTTTATCTTCAAAATTGGTTGTGAAACCTGACATGCTATTTGGTAAGCGTG
atgtaac putative branch site (score: 3)
ttttatttcct putative PPT
aataataattttgttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgatatgtggaaaagttcaaatttgtatcttactagtcagccagtgcagcatgcttatgtaactcgaataataattttgttgtgtgttttatttcctagGTTACAGAATCCACCGATTTCAATGAGCTAACAGAGAAGGAACCCTGGCTTTTATCTTCAAAATTGGTTGTGAAACCTGACATGCTATTTGGTAAGCGTG
-tgatatg
- - - - - - - - - - - - - - - - - - -tcagcca
- - - - - - - - - - - - - - - - - - - - - - - - -gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtgtt