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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgagataaacacaaacttttaaatttgagtatttgtttgtgtttgattactgtttatgtggcttgctgatttttgtttttaattttttcccccaatgttttagGGCCAACAATCTAATCTGGCGAATTCAGTTAGATGGCTCCAAACTCCGAGCTCCAGTAACACT

Basic information

species Glycine max
transcript GLYMA08G16770.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593279|gb|DB966104.1|DB966104
EST:     TGGCATTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTG                         GGCCAACAATCTAATCTGGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
genomic: TGGCATTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTGgtaactgaga ... aatgttttagGGCCAACAATCTAATCTGGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
EST: gi|14206066|gb|BG839744.1|BG839744
EST:     TGGCATTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTG                         GGCCAACAATCTAATCTGGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
genomic: TGGCATTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTGgtaactgaga ... aatgttttagGGCCAACAATCTAATCTGGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
EST: gi|13562412|gb|BG550632.1|BG550632
EST:     TGGCATTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTG                         GGCCAACAATCTAATCTGGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
genomic: TGGCATTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTGgtaactgaga ... aatgttttagGGCCAACAATCTAATCTGGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
EST: gi|209725513|gb|BW677810.1|BW677810
EST:     TGGCATTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTG                         GGCCAACAATCTAATCTGGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
genomic: TGGCATTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTGgtaactgaga ... aatgttttagGGCCAACAATCTAATCTGGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgtttatgtggcttgctgatttttgtttttaattttttcccccaatgttttagGGCCAACAATCTAATCTGGCGAATTCAGTTAGATGGCTCCAAACTCCGAGCTCCAGTAACACT
                            ttttaat  putative branch site (score: 3)
                                  ttttttcccccaat  CT-rich tract
                  tgatttttgtttttaa  TA-rich tract