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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatttcatcgttattctttgagaacatgtattcgcctcaatgtctatattctggacagattactgaaaccatttctattctgcttcctatgtctgacagTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAAGGTTGTCTTTGATGATCACACATCGAAAGAGTGCCTCAAACAACTTAACCAG

Basic information

species Glycine max
transcript GLYMA08G16670.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16670.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0044g01290.t01 (Vitis vinifera), 3'ss of exon 2
ttatttcatcgttattctttgagaacatgtattcgcctcaatgtctat-attctggacagattactgaaaccatttctattctgcttcc-tatgtctgacagTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAAGGTTGTCTTTGATGATCACACATCGAAAGAGTGCCTCAAACAACTTAACCAG
 |||||||     |  | |    ||     |   | ||  || | | |   | |   ||| ||| |  |    | |  ||  ||  |    |  | | |||||||||| || ||||||||||| |||||||||||||||||||| |  |||||||| ||||| ||||| ||||| || ||||| ||||||
ctatttcaaaa--acccatgttaaatggtaaggagactatatatttgttgctttattcagtttattttatttttctaaatgttgtgtatgcaattttaacagTGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGATCATACATCAAAAGAATGCCTTAAGCAACTGAACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317547|gb|GR826531.1|GR826531
EST:     GGACGGGGAACATTTGGGCATGTTTATCTGGGATTCAATAG                         TGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAAGGTTGTCTTTGATGA
genomic: GGACGGGGAACATTTGGGCATGTTTATCTGGGATTCAATAGgtaactattg ... tgtctgacagTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAAGGTTGTCTTTGATGA
EST: gi|10843253|gb|BF066561.1|BF066561
EST:     AAGCTTCTAGGACGGGGAACATTTGGGCATGTTTATCTGGGATTCAATAG                         TGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAAGGTTGTCTTTGATGA
genomic: AAGCTTCTAGGACGGGGAACATTTGGGCATGTTTATCTGGGATTCAATAGgtaactattg ... tgtctgacagTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAAGGTTGTCTTTGATGA
EST: gi|26048798|gb|CA785251.1|CA785251
EST:     AAGCTTCTAGGACGGGGAACATTTGGGCATGTTTATCTGGGATTCAATAG                         TGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAAGGTTGTCTTTGATGA
genomic: AAGCTTCTAGGACGGGGAACATTTGGGCATGTTTATCTGGGATTCAATAGgtaactattg ... tgtctgacagTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAAGGTTGTCTTTGATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattctggacagattactgaaaccatttctattctgcttcctatgtctgacagTGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAAGGTTGTCTTTGATGATCACACATCGAAAGAGTGCCTCAAACAACTTAACCAG
                                      cttcctat  CT-rich tract
                          atttctatt  TA-rich tract