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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatttccttaaattctttgtaaatgctttttgcatctagttaacattgttaaagacataattgcagaaatatgtttgtattctatgtatgtgtttatagtttccttttctgacttattctttgctattcttttatttctagGCACTTGTAGAAATCAATCTACATGTAGCAGAGGTTCAGAACACTGGAG

Basic information

species Glycine max
transcript GLYMA08G16620.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51345232|gb|CO985965.1|CO985965
EST:     GGTTAGTGGATGTATTTCCCATTGAAGATCGCAAAAGTGCTCTTCGTGAG                         GCACTTGTAGAAATCAATCTACATGTAGCAGAGGTTCAGAACACTGGAG
genomic: GGTTAGTGGATGTATTTCCCATTGAAGATCGCAAAAGTGCTCTTCGTGAGgttatttcct ... ttatttctagGCACTTGTAGAAATCAATCTACATGTAGCAGAGGTTCAGAACACTGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtgtttatagtttccttttctgacttattctttgctattcttttatttctagGCACTTGTAGAAATCAATCTACATGTAGCAGAGGTTCAGAACACTGGAG
                    ttctgac  putative branch site (score: 2)
             tttccttttctgactt  CT-rich tract
                                      tattcttttatttcta  TA-rich tract