1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatctcctttggaggtgtgatctttgttttgaaggtgttgagttgttttgagatcttgatgtttgataaaatgggttttttttatggttgattgtggcagGAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTTGTGAGACTTAAAGGGGGTGATCCATTG
species | Glycine max |
transcript | GLYMA08G16030.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAG GAGGAAATACAEST: gi|213602559|gb|DB968869.1|DB968869
genomic: CTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAGgtaaagataa ... attgtggcagGAGGAAATACA
EST: CTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAG GAGGAAATACATGAGCTTCTTTEST: gi|209698566|gb|BW652419.1|BW652419
genomic: CTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAGgtaaagataa ... attgtggcagGAGGAAATACATGAGCTTCTTT
EST: CTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAG GAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTTEST: gi|209697322|gb|BW655563.1|BW655563
genomic: CTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAGgtaaagataa ... attgtggcagGAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTT
EST: CTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAG GAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTTEST: gi|192326902|gb|FK015144.1|FK015144
genomic: CTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAGgtaaagataa ... attgtggcagGAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTT
EST: CTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAG GAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTTEST: gi|254336247|gb|GR842426.1|GR842426
genomic: CTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAGgtaaagataa ... attgtggcagGAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTT
EST: CTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAG GAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTTEST: gi|213616527|gb|DB967177.1|DB967177
genomic: CTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAGgtaaagataa ... attgtggcagGAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTT
EST: CTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAG GAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTT
genomic: CTAGGCTTCTCTATGTGGGCAAGACTGCTGGGTATCATAGCAGAACACAGgtaaagataa ... attgtggcagGAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTT
ttttgagatcttgatgtttgataaaatgggttttttttatggttgattgtggcagGAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTTGTGAGACTTAAAGGGGGTGATCCATTG
atgtttgataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctcctttggaggtgtgatctttgttttgaaggtgttgagttgttttgagatcttgatgtttgataaaatgggttttttttatggttgattgtggcagGAGGAAATACATGAGCTTCTTTTGAGTTTTGCAGAAGCTGGGGCAACTGTTGTGAGACTTAAAGGGGGTGATCCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - ggaggtg
- - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - cttgatg