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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

Basic information

species Glycine max
transcript GLYMA08G15480.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 2
--------------------gttagtacttcgt------ggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
                    |  |   | | ||        |||| |   |  | | |  |     | ||| |    || |||| |   | ||| |  |||| || |   | |||| || |||||||| || ||||||||  | ||||| || || |||||||||||||| || |||||||| || ||||||||||||||||| ||||| ||||
gtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcatcaagtattaact-gttttcatttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 2
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
||   ||  || || | ||    |||   |||      ||||    || |   ||    |  | || |  | |  |||| |  |||||||||| ||||||||||| ||||| || ||||| ||||| || || ||||| ||  |||| || || || ||||| |||||||||||||| ||||||||||
gtggtta--tcctgaacttagtcttttcagcaaagcggtatgttcctcatagctt----aacggatcacct-tcctaatgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
------------------------------------gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatt-tattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
                                    ||| | ||     |||| ||    || |    ||         |  | |  ||  |  ||   | | ||  | | || || ||||| |||| || ||||||||||| ||||| || |||||||||||||| || ||||| ||| | || || || |||||||| |||||||| ||||| || |||||||
gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttgtagcacccaacgaattgatcatttcttcatgtggaatagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtga-ataatttattttaat--atggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
||  |   ||| |    |||| |  | || | |      ||| | ||| |    |  | | |   | | |  |||  | |  ||     |||| || || ||||| || ||||| || ||||| || || || |||||||||||||| ||||| || || ||||||||||| || ||||| || |||||||
gtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 3'ss of exon 2
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcat--aagtgaataatttattttaatatggaac-agGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
|||  |  ||| |  |   ||||    | |  | |    || || |   ||||||  |  ||   ||||||   | | | | |    | |||| || ||||||||||| ||||| || || || || || || ||||| ||||| || ||||| || |||||||| |||||||| ||||| ||||| ||||
gtt--tgattcttataccattgtccattcgttttttttaattcatggaatgagttgttcaaaaataataataactctcactctctctctagGCTGGTTTTGCTGGTGATGATGCCCCCAGAGCAGTGTTCCCTAGTATAGTTGGTCGCCCTCGGCACACTGGTGTCATGGTTGGAATGGGCCAAAAAGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 3
gttagtacttcgtggatttttgtttt--gttgcatgtgcatatgca-agtcttgagttcataagtgaata-atttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
|| ||  |  | |      |          |  || || | |  |  | |    |||     | | | ||  | ||  ||    |     |||| || |||||||| |||||||| || |||||||| || || |||||||||||||| ||||| || |||||||||||||| |||||||| || |||||||
gtcagccccccctcccccctgacccccaacttgatttgtacaaccttatttccaagtatgccactaattatgtgtaccttctactcttctagGCTGGTTTTGCTGGCGACGATGCACCAAGGGCTGTTTTCCCTAGTATTGTTGGCCGTCCTCGCCACACTGGTGTTATGGTAGGGATGGGACAGAAGGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G067985_T08 (Zea mays), 3'ss of exon 1
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtga-ataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
                  |  |     | ||     | | | |||   ||   | || |  ||  |  | |||| |   | |     |||| || |||||||| |||||||| || ||||| || || || || ||||||||||| ||||| || |||||||| ||||| |||||||| || |||||||
-----------------gtcagccccttggccctgacttgtacaacctttatttccaaatatgccactaattatgtc--tgtcctttagGCTGGTTTTGCTGGGGACGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
||| ||| ||| ||    ||     || | ||||| ||    ||    |||   |  ||| | ||| |  |     | ||  |  ||||| || ||||||||||||||||| || |||||||| || || || |||||||| || || || || ||||| || |||||||| ||||| || |||||||
gtttgtagttcttg----ttcacgctgcttcatgttcagtaaca----ttgttctgttaatttaatcacatcacaaactactgg-cagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 2
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatgga------acagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
||| ||| ||| ||    ||  |  || | | |     | |||||   ||   | | ||| | ||| |    ||||  ||   |       ||||| || ||||||||||||||||| || |||||||| || || || ||||| || || || || || |||||||| |||||||| ||||| || |||||||
gtttgtagttcttg----ttcatgctggtacttcatattctgcaacctttttctgc-taatttaatcacacgttttcttacaaactattggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTCGGACGCCCCCGTCACACTGGTGTGATGGTTGGCATGGGGCAGAAGGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G053284_T01 (Zea mays), 3'ss of exon 2
gttagtacttc-gtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
||| || || | ||  |        |  ||     ||  ||| ||  |  |||  | ||||    ||     || || ||    |||||||||| || ||||||||||| || || ||||| ||||||||||| || || ||| | || || || ||||| || ||||| || ||||| ||||||||||
gttcgttctcctgtccagcagccaatccttttgcctgtctattcat-tactgatctaataaactgatggg--atcttgatgccaaacagGCAGGTTTCGCTGGTGACGACGCGCCGAGGGCAGTCTTTCCCAGCATCGTAGGCAGGCCACGCCACACTGGCGTGATGGTGGGCATGGGCCAAAAGGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 2
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaa-tatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
                    |        |    ||  | ||  |  ||| | |||  || |     | | ||| |   | |     |||| || |||||||| || ||||| || ||||| || || || || ||||||||||| ||||| || |||||||| ||||| |||||||| || ||||| |
-------------------gtcagcccccgtccctgactttgacaacctttacttc-caaatatgccactaattatgtctgtcttttagGCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGACG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G067985_T06 (Zea mays), 3'ss of exon 2
----------gttagtacttcgtggatttttgtt--ttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaa-tatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
            | | |||     | |    ||        |    ||  | ||  |  ||| | |||  || |     | | ||| |   | |     |||| || |||||||| || ||||| || ||||| || || || || ||||||||||| ||||| || |||||||| ||||| |||||||| || ||||| |
tgtctgcgacaatggcactggaatggtcaaggtcagcccccgtccctgactttgacaacctttacttc-caaatatgccactaattatgtctgtcttttagGCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGACG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G082484_T01 (Zea mays), 3'ss of exon 2
-------------------gtta-gtacttcgtggatttttgttttgttg--catgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
                   || |  | ||  |  ||||  | ||||   |      |  |||    | | || |||  ||   | | || |||      || |   | |||| || |||||||| || ||||||||  | ||||| || || ||||| ||||| || || || || |||||||| |||||||||||||| || |||||||
gtaattgtggccacttggcgtcatattctctgcagattcctttttttcaggcagcttttataatttaattttcagtcgatgt-tcattattttccccccatctcttatagGCTGGCTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCAAGTATAGTTGGTCGTCCACGCCACACTGGTGTCATGGTTGGGATGGGACAGAAGGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagt-acttcgtggatttttgttttgt-tgcatgtgcatatgcaagtcttgagttcataag-tgaataat--ttattttaatatgg-aacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
|| ||| |    ||  ||||   |  ||| ||  | |     |    ||  |   |   ||||   | | ||  | |||||  |||   ||||||| || ||||||||||| ||||| || || || || || || ||||||||||| || ||| | || |||||||| |||||||| |||||||| || ||||
gtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTCCTAGGCACACTGGTGTCATGGTTGGTATGGGTCAGAAAGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
           ||   | | |  ||| || | | |    || |   |||| | ||    |     | ||  |  ||  | ||   ||||| ||||| ||||| || |||||||| || || || || |||||| ||||||| |||||| |||||  |||||| ||||||||||||  ||| || ||||
-----------gttagtctcttctttcttac-tttaaggattc---tcttaattttggcaagatttgatacaagttcctttgtg-cagGCTGGATTCGCTGGAGATGATGCTCCCAGAGCGGTTTTCCCCAGTGTTGTTGGTCGACCTAGACATCATGGTGTCATGGTTGGGATGAATCAGAAAGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 3
------------gttagtactt--cgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatgga-acagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
             ||  | |||    || |  |||||| |||||  ||    |   ||| |  | | ||   |   |  |    | || |  | |  |  ||||| |||||||| ||||| |||||||| ||||| || ||||| |||||||| || || ||  | || |||||||| |||||||||||||||||||| ||||
gtctgttgtttctttcttgcttgatatgcagatttgttgtgttgtttgctgctcctcaaatgctcaatttgaataagctttccatgttatgctttatatgcagGCTGGATTTGCGGGTGATGATGCTCCCAGGGCAGTGTTTCCTAGTATTGTGGGTCGGCCAAGGCACACTGGTGTCATGGTTGGGATGGGTCAAAAAGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ17401 (Selaginella moellendorffii), 3'ss of exon 1
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
                       |  | | |  | ||   | |   |  ||  ||   |   |     | | || |         ||||| |||||||| || ||||||||||| ||||| || |||||||| ||||| ||||| ||    || || || || |||||||| ||||| || |||||||
----------------------gtgcgctcctggcgcggtttc---ttgtggattttgatccggggggtgtgttcttg-------cagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

upper sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ35077 (Selaginella moellendorffii), 3'ss of exon 1
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
                       |  | | |  | ||   | |   |  ||  ||   |   |     | | ||||         ||||| |||||||| || ||||||||||| ||||| || |||||||| ||||| ||||| ||    || || || || |||||||| ||||| || |||||||
----------------------gtgcgctcctggcgcgatttc---ttgtggattttgatccggggggtgtgtttttg-------cagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295965|gb|FG989387.1|FG989387
EST:     CCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAG                         GCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTT
genomic: CCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAGgttagtactt ... tatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTT
EST: gi|16347205|gb|BI972800.1|BI972800
EST:     CCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAG                         GCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTT
genomic: CCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAGgttagtactt ... tatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTT
EST: gi|8283584|gb|BE021143.1|BE021143
EST:     CCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAG                         GCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTT
genomic: CCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAGgttagtactt ... tatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTT
EST: gi|4303219|gb|AI443445.1|AI443445
EST:     CCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAG                         GCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTT
genomic: CCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAGgttagtactt ... tatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTT
EST: gi|209707860|gb|BW656991.1|BW656991
EST:     CCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAG                         GCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTT
genomic: CCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAGgttagtactt ... tatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTT
EST: gi|209724985|gb|BW662986.1|BW662986
EST:     CCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAG                         GCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTT
genomic: CCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAGgttagtactt ... tatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcatatgcaagtcttgagttcataagtgaataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG
                                       ttttaat  putative branch site (score: 3)
                  agttcataagtgaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG