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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagattggctttgtatttcctttctttgactctggtatcttgttactgttgtggaaaaatttcttacagcgttaatgatgaatgaattgcagGTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGATACTGATGACTTGGACAATGAGTTTGATTATGGGGATATTGATGCTTTGGGCCCACAACCAAT

Basic information

species Glycine max
transcript GLYMA08G15380.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15380.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G64740.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagattggctttgtatttcctttctttgactctggtatcttgttactgttgtggaaaaatttct----tacagcgttaatgatgaatgaattgcagGTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGATACTGATGACTTGGACAATGAGTTTGATTATGGGGATATTGATGCTTTGGGCCCACAACCAAT-
         | |   | |||  |       | |    |   || ||     ||| ||| | |||||    |     |   ||| ||  ||  |   ||| ||||| || |||||||| ||||||||||||||||| | |||||| || |||||||||||||| |||||  ||| ||  | || |     |  |    | 
---------gttcgttgtttgttagaccaaatttctttggttttttgtgaatgtagaagattttctgatttgttcggcctatgttgt-tgtttgttagGAAGTCCAAGAGTTGAAGGTGATGAAGAGGAAGATGACATTGATGATTTAGACAATGAGTTTGAGTATGGAAATAATGG-GATTGGATTTGATCAGGTTTC

upper sequence: GLYMA08G15380.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 2
gtgagattggctttgtatttcctttctttgactctggtatcttgttactgttgtggaaaaatttcttacagcgttaatgatga-----atgaattgcagGTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGATACTGATGACTTGGACAATGAGTTTGATTATGGGGATATTGATGCTTTGGGCCCACAACCAAT----
              || | | | |||||  |    |  ||    |  |    |     ||  ||  |  |   |   |||| |     |||| ||||||| ||||||||||||||||||||||| || || || |||| ||||||  | ||  |||||||||||||||   ||  | || ||| || | |||||  | |    
--------------gtctctgcattcttcaatgtggagattccatggc-acagcccttaagctttgtgaattatctctgataagcagcatgatttgcaggcagTCCCAGGGTTGAAGGCGATGAGGAAGAGGACGATATTGATGATCTAGAACATGAGTTTGATTATGCAAATTCTAATACTTGGGCCACACAAGAAGTTGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207804575|gb|GD777748.1|GD777748
EST:     GGGGAACCAGGCTTGTCCTCAGTGCAAGACCAGATACAAACGTATCAAAG                         GTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGATACTGATGACTTGG
genomic: GGGGAACCAGGCTTGTCCTCAGTGCAAGACCAGATACAAACGTATCAAAGgtgagattgg ... tgaattgcagGTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGATACTGATGACTTGG
EST: gi|208096661|gb|GD893348.1|GD893348
EST:     GGGGAACCAGGCTTGTCCTCAGTGCAAGACCAGATACAAACGTATCAAAG                         GTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGATACTGATGACTTGG
genomic: GGGGAACCAGGCTTGTCCTCAGTGCAAGACCAGATACAAACGTATCAAAGgtgagattgg ... tgaattgcagGTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGATACTGATGACTTGG
EST: gi|207787173|gb|GD756290.1|GD756290
EST:     GGGGAACCAGGCTTGTCCTCAGTGCAAGACCAGATACAAACGTATCAAAG                         GTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGATACTGATGACTTGG
genomic: GGGGAACCAGGCTTGTCCTCAGTGCAAGACCAGATACAAACGTATCAAAGgtgagattgg ... tgaattgcagGTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGATACTGATGACTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgttactgttgtggaaaaatttcttacagcgttaatgatgaatgaattgcagGTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGATACTGATGACTTGGACAATGAGTTTGATTATGGGGATATTGATGCTTTGGGCCCACAACCAAT
                 aaaaatttcttaca  TA-rich tract