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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaactatattttttttttttatctttgaaagtatcaagttttaacactgccagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTGGACAATGTGCGATATTCAAGGGACACAAAACTTAGCATTTCTCTAGTTC

Basic information

species Glycine max
transcript GLYMA08G15250.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15250.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G39390.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaacaactatattttttttttttatctttgaaagtatcaagttttaacactgccagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTGGACAATGTGCGATATTCAAGGGACACAAAACTTAGCATTTCTCTAGTTC
            | | |  |||||    | ||     |   | ||||    | ||   |   ||  |   | ||  ||   | |     |       |    | | |||||||| |||||||||||||| || || |||||| | || ||||||||  | ||||||||  | |||||||| || ||||| ||||||||||   ||||||
-----------gtctgtcctttttcatctcga-----tgcggatttacgttttccttcgtttaaagttttttttagtaagatcttgaaacgagtgtgttggcattgcagATTGCGAAGCTGAGTATGATCCCGGTTTCTTGTCTTCTAGAAGTTATGCTTGACAATGTCAGGTATTCAAGAGATACAAAGCTTAGCATTTTGTTAGTTC

upper sequence: GLYMA08G15250.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 3'ss of exon 3
gtaacaactatattttttttttttatctttgaaagtatcaagttttaacactgccagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTGGACAATGTGCGATATTCAAGGGACACAAAACTTAGCATTTCTCTAGTTC
    ||  | |      |  |    | ||||      |   | | | | | |     |  ||||| ||   | ||||     ||| |||  || |||     |  ||||||||| |||||||||||||| ||||| || ||| | || |||||| | ||||||||  |||| || ||||||||||| || |||||||| ||  ||||||
--gtcagttttgggaactgctgac-tttttgttctccttttgctctcatatttttttt--caaagttaca-agttatg----ttctttctcttcaaactttgatgtcagATTGCGAAGCTGAGTATGATCCCAGTCTCATGTGTTCTCGAAGTTGTGTTGGACAAGATGCGGTACTCAAGGGACACCAAGCTTAGCATATCATTAGTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtgacaaagataggtatttatactgtttccttcctttgaaatgaaaacttcagATTGCTAAGCTGAGTATGATTCCAGTATCTTGTTTCCTGGAAGTTATCTTGGACAATGTGCGATATTCAAGGGACACAAAACTTAGCATTTCTCTAGTTC
                tatttatactgttt  TA-rich tract