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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaaatgtaatgttcagttttttaatctggctagaattcttttgacaaggaatcaaggatcctaattgatgacagttaaaaacatgattttaaattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAGTCTTGGTATGATTTCTTTGAGAAATG

Basic information

species Glycine max
transcript GLYMA08G14850.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14850.2 (Glycine max), 3'ss of exon 2
lower sequence: AT4G39660.1 (Arabidopsis thaliana), 3'ss of exon 2
-------agaaatgtaa-tgttcagttttt--taatctggctagaattcttttgacaaggaatcaaggatcctaattgatgacagttaaaaacatgattttaaattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAGTCTTGGTATGATTTCTTTGAGAAATG
       |||  | |||     ||  | |   | || | | |||  |||| |||       ||| ||||  |    || |             |||||||  |  |||||||||| || ||||| |||||||| |||||||| |||||  ||||||||||||||||  |  | || |||||||| ||||  |||||||| ||||||||||
gtacttgagagttttaaacaaacaagtctgaatgatgtagttaggtttctcttgttggtttatcgaggaatcagcatgctc-----------tatgatttgga--tgcagGTTGTGTACTTTGTGAATTCTGGCTCAGAAGCTAATGAGCTAGCAATGATGATGGCTAGGCTTTACACTGGTAGCCTTGAGATGATTTCCTTGAGAAATG

upper sequence: GLYMA08G14850.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0031g01330.t01 (Vitis vinifera), 3'ss of exon 2
-agaaatgtaatgttcagttttttaatctggc---tagaattcttttgacaaggaatcaaggatcctaattgatgacagttaaaaacatgattttaaattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAGTCTTGGTATGATTTCTTTGAGAAATG
  |  |||  ||    |  ||  |  | ||     || || ||| | |  ||    || | ||   ||  || ||||  || ||  |||  | | ||| |||||||||| |||||||| || ||||| |||||||| ||||||||||||||| ||||||| ||  |||||| ||||| ||||||||||||||| || |||||||
atgggatgacatcgaaaaattcctggtttgttgaatataaatctctggcaaaaatttccatgaggatatctggtgac--tttaactcat--tgtcaaaatgcagGTTGTGTATTTTGTGAACTCTGGATCAGAAGCCAATGAATTAGCAATGCTGATGGCACGACTATATAGTGGTAATCTTGGTATGATTTCCTTAAGAAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996135|gb|BM085507.1|BM085507
EST:     TAGGTGATTTTGCTGAGTCATTGGCAGCAAAAATGCCTGGAAACCTTAAG                         GTTGTTTATTT
genomic: TAGGTGATTTTGCTGAGTCATTGGCAGCAAAAATGCCTGGAAACCTTAAGgtctgttttt ... taaattgcagGTTGTTTATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaggaatcaaggatcctaattgatgacagttaaaaacatgattttaaattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAGTCTTGGTATGATTTCTTTGAGAAATG
                            agttaaaaacatgatt  TA-rich tract