Sequence
atgc intronic sequence ATGC exonic sequence...agaaatgtaatgttcagttttttaatctggctagaattcttttgacaaggaatcaaggatcctaattgatgacagttaaaaacatgattttaaattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAGTCTTGGTATGATTTCTTTGAGAAATG
Basic information
species | Glycine max |
transcript | GLYMA08G14850.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G14850.2 (Glycine max), 3'ss of exon 2
lower sequence: AT4G39660.1 (Arabidopsis thaliana), 3'ss of exon 2
-------agaaatgtaa-tgttcagttttt--taatctggctagaattcttttgacaaggaatcaaggatcctaattgatgacagttaaaaacatgattttaaattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAGTCTTGGTATGATTTCTTTGAGAAATG
||| | ||| || | | | || | | ||| |||| ||| ||| |||| | || | ||||||| | |||||||||| || ||||| |||||||| |||||||| ||||| |||||||||||||||| | | || |||||||| |||| |||||||| ||||||||||
gtacttgagagttttaaacaaacaagtctgaatgatgtagttaggtttctcttgttggtttatcgaggaatcagcatgctc-----------tatgatttgga--tgcagGTTGTGTACTTTGTGAATTCTGGCTCAGAAGCTAATGAGCTAGCAATGATGATGGCTAGGCTTTACACTGGTAGCCTTGAGATGATTTCCTTGAGAAATG
upper sequence: GLYMA08G14850.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0031g01330.t01 (Vitis vinifera), 3'ss of exon 2
-agaaatgtaatgttcagttttttaatctggc---tagaattcttttgacaaggaatcaaggatcctaattgatgacagttaaaaacatgattttaaattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAGTCTTGGTATGATTTCTTTGAGAAATG
| ||| || | || | | || || || ||| | | || || | || || || |||| || || ||| | | ||| |||||||||| |||||||| || ||||| |||||||| ||||||||||||||| ||||||| || |||||| ||||| ||||||||||||||| || |||||||
atgggatgacatcgaaaaattcctggtttgttgaatataaatctctggcaaaaatttccatgaggatatctggtgac--tttaactcat--tgtcaaaatgcagGTTGTGTATTTTGTGAACTCTGGATCAGAAGCCAATGAATTAGCAATGCTGATGGCACGACTATATAGTGGTAATCTTGGTATGATTTCCTTAAGAAATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298195656|gb|HO044047.1|HO044047EST: TAGGTGATTTTGCTGAGTCATTGGCAGCAAAAATGCCTGGAAACCTTAAG GTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATG
genomic: TAGGTGATTTTGCTGAGTCATTGGCAGCAAAAATGCCTGGAAACCTTAAGgtctgttttt ... taaattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaggaatcaaggatcctaattgatgacagttaaaaacatgattttaaattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAGTCTTGGTATGATTTCTTTGAGAAATG
agttaaaaacatgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agaaatgtaatgttcagttttttaatctggctagaattcttttgacaaggaatcaaggatcctaattgatgacagttaaaaacatgattttaaattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAGTCTTGGTATGATTTCTTTGAGAAATG
- - - - - - - - - - - - - ctggcta
- - - - - - - - - - - - - - - - - - - - - tgacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaca