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gttctttctctattccatttcacaggctacttgttttaatcatttttatttgaatatgcattttttggattttgttgtcttctgttttcgacgaatgtgctcaataaaatcagataaatgttaaaccggaacttctttttgcagCCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCAT
species | Glycine max |
transcript | GLYMA08G13680.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG CCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCEST: gi|213615293|gb|DB963487.1|DB963487
genomic: GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAGgttctttctc ... ctttttgcagCCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTC
EST: GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG CCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCEST: gi|213589389|gb|DB961722.1|DB961722
genomic: GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAGgttctttctc ... ctttttgcagCCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTC
EST: GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG CCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCEST: gi|213590572|gb|DB968122.1|DB968122
genomic: GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAGgttctttctc ... ctttttgcagCCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTC
EST: GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG CCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCEST: gi|209717579|gb|BW679686.1|BW679686
genomic: GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAGgttctttctc ... ctttttgcagCCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTC
EST: GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG CCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCEST: gi|209723170|gb|BW675116.1|BW675116
genomic: GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAGgttctttctc ... ctttttgcagCCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTC
EST: GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAG CCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTC
genomic: GAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAGgttctttctc ... ctttttgcagCCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTC
gacgaatgtgctcaataaaatcagataaatgttaaaccggaacttctttttgcagCCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCAT
cttctttttgc CT-rich tract
aataaaatcagataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctttctctattccatttcacaggctacttgttttaatcatttttatttgaatatgcattttttggattttgttgtcttctgttttcgacgaatgtgctcaataaaatcagataaatgttaaaccggaacttctttttgcagCCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA