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...tcacacttgacgtgtataacattctaataatgttgtctgtttcagtcaagttagcaatgtttcaactttcaaatatatttgcattttaacatgattgcagATTGTATTAGAAATGATTGAACTTCGAGAACTGGATACTGCACGTGCTATTTTAAGGCAAACACAGGTGATGGGTGTAATGAAACAAGAGCAGCCTGAAA
species | Glycine max |
transcript | GLYMA08G13560.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCTCAACTCAAGCTTCCCAGGAATAAGTTGGAGGATTTGTACGAGCAG ATTGTATTAGAAATGATTGAACTTCGAGAACTGGATACTGCACGTGCTATTEST: gi|209709054|gb|BW658770.1|BW658770
genomic: TTTCTCAACTCAAGCTTCCCAGGAATAAGTTGGAGGATTTGTACGAGCAGgtattttgtg ... atgattgcagATTGTATTAGAAATGATTGAACTTCGAGAACTGGATACTGCACGTGCTATT
EST: TTTCTCAACTCAAGCTTCCCAGGAATAAGTTGGAGGATTTGTACGAGCAG ATTGTATTAGAAATGATTGAACTTCGAGAACTGGATACTGCACGTGCTATT
genomic: TTTCTCAACTCAAGCTTCCCAGGAATAAGTTGGAGGATTTGTACGAGCAGgtattttgtg ... atgattgcagATTGTATTAGAAATGATTGAACTTCGAGAACTGGATACTGCACGTGCTATT
tcaagttagcaatgtttcaactttcaaatatatttgcattttaacatgattgcagATTGTATTAGAAATGATTGAACTTCGAGAACTGGATACTGCACGTGCTATTTTAAGGCAAACACAGGTGATGGGTGTAATGAAACAAGAGCAGCCTGAAA
ttttaac putative branch site (score: 2)
tttcaaatatatttgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacacttgacgtgtataacattctaataatgttgtctgtttcagtcaagttagcaatgtttcaactttcaaatatatttgcattttaacatgattgcagATTGTATTAGAAATGATTGAACTTCGAGAACTGGATACTGCACGTGCTATTTTAAGGCAAACACAGGTGATGGGTGTAATGAAACAAGAGCAGCCTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG