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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttcttctttcttcgcattttcattttgttttttttgtttcttttgtaacaaacaatacctatctacagATTGAGCTTCAAAATTCCTGTCGCCAAGGGAAGAAACTGCTTGTTCTGGATATTGATTACACTCTCTTTGATCACCGCTCCACTGCTGAGAACCCTCTTC

Basic information

species Glycine max
transcript GLYMA08G13320.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13320.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv12s0035g00640.t01 (Vitis vinifera), 3'ss of exon 2
-----------------------------gttcttcttctttcttcgcattttcattttgttttttttgtttcttttgtaacaaacaatacctatctacagATTGAGCTTCAAAATTCCTGTCGCCAAGGGAAGAAACTGCTTGTTCTGGATATTGATTACACTCTCTTTGATCACCGCTCCACTGCTGAGAACCCTCTTC
                              ||     |  |      | ||  || | | |     | |||     |||    ||   | | | | || ||||||| || |  ||  | || ||  | ||||| ||||||||||| |||||||| ||||| ||||| ||||||||||| || || || |||||||||||| 
caaatggcatttttaacttgtatgcagagattagaacttgtagaatacgttggcactgtttgaaactcgttctgaatgtctataatgtttctt-tttatagATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGATATCGATTATACTCTATTTGATCACCGTTCAACAGCAGAGAACCCTCTTG

upper sequence: GLYMA08G13320.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ35150 (Selaginella moellendorffii), 3'ss of exon 2
------gttcttcttctttcttcgcattttcattttgttttttttgtttcttttgtaacaaacaatacctatctacagATTGAGCTTCAAAATTCCTGTCGCCAAGGGAAGAAACTGCTTGTTCTGGATATTGATTACACTCTCTTTGATCACCGCTCCACTGCTGAGAACCCTCTTC
        |  |||| | |    ||| |||  |  ||| |||  | ||| ||  ||      |  ||       |||| |  ||||    ||| | |||||||  || |||||||| || ||| |||||||||||||||| ||||||||||| || ||||| || ||||| || ||  
gttagaaataatcttgtgttcctgcacttttctcatgtctttcatttttattgcgtg-----ctttattcgctgacagTTAAAGCTGTTGAATCCTTGTCGCCCGGGAAAGAAACTTCTCGTTTTGGATATTGATTACACGCTCTTTGATCATCGTTCCACCGCCGAGAATCCCCTGG

upper sequence: GLYMA08G13320.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ24099 (Selaginella moellendorffii), 3'ss of exon 2
------gttcttcttctttcttcgcattttcattttgttttttttgtttcttttgtaacaaacaatacctatctacagATTGAGCTTCAAAATTCCTGTCGCCAAGGGAAGAAACTGCTTGTTCTGGATATTGATTACACTCTCTTTGATCACCGCTCCACTGCTGAGAACCCTCTTC
        |  |||| | |    ||| |||  |  ||| |||  | ||| ||  ||      |  ||       |||| |  ||||    ||| | |||||||  || |||||||| || ||| |||||||||||||||| ||||||||||| || ||||| || ||||| || ||  
gttagaaataatcttgtgttcctgcacttttctcatgtctttgatttttattgcgtg-----ctttattcgctgacagTTAAAGCTGTTGAATCCTTGTCGCCCGGGAAAGAAACTTCTCGTTTTGGATATTGATTACACGCTCTTTGATCATCGTTCCACCGCCGAGAATCCCCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattttcattttgttttttttgtttcttttgtaacaaacaatacctatctacagATTGAGCTTCAAAATTCCTGTCGCCAAGGGAAGAAACTGCTTGTTCTGGATATTGATTACACTCTCTTTGATCACCGCTCCACTGCTGAGAACCCTCTTC
                             ttgtaac  putative branch site (score: 2)
                                            cctatct  putative PPT
        attttgttttttttgt  TA-rich tract