Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgctgctcagttctcatttttgttcttcagtggggaatttagactttcgttttgtgtgtgttgatttaaattaagcctttgttggttggttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG

Basic information

species Glycine max
transcript GLYMA08G12220.5
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12220.5 (Glycine max), 3'ss of exon 2
lower sequence: Vv10s0003g01240.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtgctgctcagttctcatttttgttcttcagtggggaatttagactttcgttttgtgtgtgttgatttaaattaagcctttgttggttggttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG
              ||    ||||||| |  | |    |  |||||  || | |||| |        |||||   ||| |  || | |   ||  |||||||||||| || |||||||| |||||  | |||||||| ||||| ||  | ||||  ||||||||||||||||| ||  |||| || ||||||
--------------gtgagtatttttggttctgac---gtgatttatgctctagtttggga------gattt---ttagggtttgggttcgtgtgtggttgcagGAAAGGCGACTATTATCGGTATTTGGCGGAGTTTAAGTCTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG

upper sequence: GLYMA08G12220.5 (Glycine max), 3'ss of exon 2
lower sequence: Vv19s0014g01420.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtgctgctcagttctcatttttgttcttcagtggggaatttagactttcgttttgtgtgtgttgatttaaattaagcctttgttggttggttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG
                  | |    | |  || |||  ||    |    |||| ||| | |||  |||||||   |      ||    | ||||||| || |||||| ||||| ||||| |||||||| |||||||||||| ||||  ||||||| |||||||| |||||||| ||  | ||||| || |||
-----------------gtaaggaatatgtttgagtttggtgcattttatttcattt-gagtgctttgatttttgtagtaatttcagggtttggttg-tttcagGAAAGGGGATTATTATCGGTACCTGGCGGAGTTCAAGACCGGCAATGAGAGGAAAGAGGCGGCTGATCAGTCTCTTAAGGCATACCAG

upper sequence: GLYMA08G12220.5 (Glycine max), 3'ss of exon 2
lower sequence: PP1S201_25V6.1 (Physcomitrella patens), 3'ss of exon 2
----gtgagtgctgctcagttctcatttttgttcttcagtggggaatttagactttcgttttgtgtgtgttgatttaaattaagcctttgttggttggttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG
    || | | ||   | | ||  ||  | ||  |  || || |  | | |   || ||  ||          | | |  |  | || || |||  ||  ||||  |||||||| ||||| ||||||||||| |||||||||||  | || | |||||||||||| |||||||| || ||  ||||||| || |||
atcggttaattcttgaccggtcctatagtcgtcttcaagaggagtgtctgg---tttgtgctg---acagaagtctgatgtttgtctgtgatgggcgg--ggttctagGAAGGGAGACTACTACCGGTACCTGGCGGAGTTCAAAACTGGGGCTGAGAGAAAAGAAGCTGCTGACCAATCTTTGAAGGCCTACCAG

upper sequence: GLYMA08G12220.5 (Glycine max), 3'ss of exon 2
lower sequence: PP1S46_127V6.1 (Physcomitrella patens), 3'ss of exon 2
gtgagtgctgctcagttctcatttttgttcttcagtggggaatttagactttcgttttgtgtgtgttgatttaaattaagcctttgttggttggttggttg-cagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG
    | |  |   | |   |   |    ||  ||||  |   | |    ||| |    |||       || |   || |    |   || | ||| || ||  |||||||| || || || |||||||| |||||||||||| ||||  ||||||| |||||||| ||||| || ||  ||||||| || |||
---cgagaaggataatctgcggatcgcatccgcagttagc--tctgactttttgagacgtgacctgaaatctgttttgatatatgcgtgatgggtggggtgatagGAAGGGAGATTACTATCGGTACCTGGCGGAGTTCAAGACCGGGAATGAGAGGAAAGAGGCCGCTGACCAATCTTTGAAGGCATACCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298177346|gb|HO027127.1|HO027127
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAG
EST: gi|193313226|gb|FK279181.1|FK279181
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTACCGGTGATGAGA
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGT-CCGGTGATGAGA
EST: gi|298163055|gb|HO011788.1|HO011788
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|10846741|gb|BF069606.1|BF069606
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|298170594|gb|HO019218.1|HO019218
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|208177237|gb|GD974446.1|GD974446
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGT
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGT
EST: gi|23058349|gb|BU578308.1|BU578308
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|208255162|gb|GE050813.1|GE050813
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|298194812|gb|HO043284.1|HO043284
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|209698244|gb|BW667547.1|BW667547
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|207817119|gb|GD786784.1|GD786784
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTAC
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTAC
EST: gi|11273769|gb|BF324164.1|BF324164
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|193514293|gb|FK470609.1|FK470609
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|298195876|gb|HO044267.1|HO044267
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|207750677|gb|GD723902.1|GD723902
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|298177315|gb|HO027096.1|HO027096
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|298165318|gb|HO011367.1|HO011367
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|21677259|gb|BQ629610.1|BQ629610
EST:     AGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: AGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|208186969|gb|GD985069.1|GD985069
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|207720046|gb|GD702545.1|GD702545
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|298180771|gb|HO022210.1|HO022210
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|207730991|gb|GD706506.1|GD706506
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTG-CTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|9819560|gb|BE555073.1|BE555073
EST:     CTTATTCCCTCTAGCTGTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGNTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|193312196|gb|FK275672.1|FK275672
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|15201076|gb|BI424680.1|BI424680
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|37994791|gb|CF806380.1|CF806380
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|193391464|gb|FK355089.1|FK355089
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|208330271|gb|GE132216.1|GE132216
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|298178152|gb|HO027535.1|HO027535
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|10237538|gb|BE806426.1|BE806426
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|193673030|gb|FK620348.1|FK620348
EST:     TTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTTACAAAAT                         GAAGGGGGACGTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAG
genomic: TTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTC-TACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGAC-TATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAG
EST: gi|298197425|gb|HO044904.1|HO044904
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|151393532|gb|EV263407.1|EV263407
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAGGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|31560979|gb|CD486817.1|CD486817
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|298174010|gb|HO017346.1|HO017346
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|192305213|gb|FG993965.1|FG993965
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|192297914|gb|FG988370.1|FG988370
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|298194634|gb|HO043106.1|HO043106
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATG
EST: gi|192307132|gb|FK002294.1|FK002294
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
EST: gi|298194423|gb|HO041071.1|HO041071
EST:     CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCTGCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcgttttgtgtgtgttgatttaaattaagcctttgttggttggttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG
              tgttgat  putative branch site (score: 4)
              tgttgatttaaattaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgctgctcagttctcatttttgttcttcagtggggaatttagactttcgttttgtgtgtgttgatttaaattaagcctttgttggttggttggttgcagGAAGGGGGACTATTACCGGTACCTCGCGGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAGGCGTATCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT