Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatactaaacagccactttggattttacttgcacgcatatgcgcatgcacacacacacataacaaacactgacaaggttcaagaacttcactggtgtaagacatcggttttcttgaaacgaaatccttattaagtcagatttaccatatttcagATCAGGCCGCATTTATGTGGTTGACACAAGATCAAATCCAAGGTCTCCATCTTTGCACAAAGTTGTTGAGCCAGAAGACATCATAAGTAAGACTGGATTA

Basic information

species Glycine max
transcript GLYMA08G11400.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600774|gb|DB956208.1|DB956208
EST:     TATGGAGATCCATCAGCAGTTCGGCGATATCTGATTCTACCTTCACTGGT                         ATCAGGCCGCATTTATGTGGTTGACACAAGATCAAATCCAAGGTCTCCATC
genomic: TATGGAGATCCATCAGCAGTTCGGCGATATCTGATTCTACCTTCACTGGTgtaagatact ... catatttcagATCAGGCCGCATTTATGTGGTTGACACAAGATCAAATCCAAGGTCTCCATC
EST: gi|213606564|gb|DB959018.1|DB959018
EST:     TATGGAGATCCATCAGCAGTTCGGCGATATCTGATTCTACCTTCACTGGT                         ATCAGGCCGCATTTATGTGGTTGACACAAGATCAAATCCAAGGTCTCCATC
genomic: TATGGAGATCCATCAGCAGTTCGGCGATATCTGATTCTACCTTCACTGGTgtaagatact ... catatttcagATCAGGCCGCATTTATGTGGTTGACACAAGATCAAATCCAAGGTCTCCATC
EST: gi|213595227|gb|DB962366.1|DB962366
EST:     TATGGAGATCCATCAGCAGTTCGGCGATATCTGATTCTACCTTCACTGGT                         ATCAGGCCGCATTTATGTGGTTGACACAAGATCAAATCCAAGGTCTCCATC
genomic: TATGGAGATCCATCAGCAGTTCGGCGATATCTGATTCTACCTTCACTGGTgtaagatact ... catatttcagATCAGGCCGCATTTATGTGGTTGACACAAGATCAAATCCAAGGTCTCCATC
EST: gi|298190089|gb|HO032210.1|HO032210
EST:     TATGGAGATCCATCAGCAGTTCGGCGATATCTGATTCTACCTTCACTGGT                         ATCAGGCCGCATTTATGTGGTTGACTCAAGATCAAATCCAAGGTCTCCATC
genomic: TATGGAGATCCATCAGCAGTTCGGCGATATCTGATTCTACCTTCACTGGTgtaagatact ... catatttcagATCAGGCCGCATTTATGTGGTTGACACAAGATCAAATCCAAGGTCTCCATC
EST: gi|298165728|gb|HO008699.1|HO008699
EST:     TATGGAGATCCATCAGCAGTTCGGCGATATCTGATTCTACCTTCACTGGT                         ATCAGGCCGCATTTATGTGGTTGACACAAGATCAAATCCAAGGTCTCCATC
genomic: TATGGAGATCCATCAGCAGTTCGGCGATATCTGATTCTACCTTCACTGGTgtaagatact ... catatttcagATCAGGCCGCATTTATGTGGTTGACACAAGATCAAATCCAAGGTCTCCATC
EST: gi|213591586|gb|DB955794.1|DB955794
EST:     TATGGAGATCCATCAGCAGTTCGGCGATATCTGATTCTACCTTCACTGGT                         ATCAGGCCGCATTTATGTGGTTGACACAAGATCAAATCCAAGGTCTCCATC
genomic: TATGGAGATCCATCAGCAGTTCGGCGATATCTGATTCTACCTTCACTGGTgtaagatact ... catatttcagATCAGGCCGCATTTATGTGGTTGACACAAGATCAAATCCAAGGTCTCCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacatcggttttcttgaaacgaaatccttattaagtcagatttaccatatttcagATCAGGCCGCATTTATGTGGTTGACACAAGATCAAATCCAAGGTCTCCATCTTTGCACAAAGTTGTTGAGCCAGAAGACATCATAAGTAAGACTGGATTA
                           ttattaagt  TA-rich tract