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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtaatttttttttaatttttgataattcttgctatcatatttctctttccttttaaccttttggtgtcttgtgcttaaccagatggtggttgttttaccctattgacttcgttattctacttgtagATTTTCCGGATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCCAAATTACCTGGAGTCAAGGTCAATTTTGTCAAACACCA

Basic information

species Glycine max
transcript GLYMA08G10810.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10810.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G67580.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgtgtaatttttttttaatttttgataattcttgctatcatatttctctttccttttaaccttttggtgtcttgtgcttaaccagatggtggttgttttaccctattgacttcgttattctacttgtagATTTTCCGGATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCCAAATTACCTGGAGTCAAGGTCAATTTTGTCAAACACCA
                                   |  | | |   |    |||  |||  | ||   |   || || |    |||| ||   | || |        | | ||| | || ||  | ||  |||||||| | || ||||| || || |||||| | ||||||||||||||||| ||| ||||||||||||||||||| |||||||| || ||
----------------------------------gtattttaaacatcggttttgatttggatctccagccatcctggg----accacatacagcttata-------aattactcc-ttctttaatttacagATTTTCAGAATCCTTGGTACTCCCAATGAATCTATTTGGCCTGGGTTCTCTAAACTACCTGGAGTCAAGGTCAACTTTGTCAAGCATCA

upper sequence: GLYMA08G10810.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0010g02550.t01 (Vitis vinifera), 3'ss of exon 2
---gtatgtgtaatttttttttaatttttgata-attcttgctatcatatttctctttccttttaaccttttggtgtcttgtgcttaaccagatggtggttgttttaccctattgacttcgttattctacttgtagATTTTCCGGATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCCAAATTACCTGGAGTCAAGGTCAATTTTGTCAAACACCA
      |   || ||   || |   || ||||| |||     |||    |  | |  | ||    |  |  |  |   |  |   |    |  |   | ||  || |  || |        |   | |  ||| |||||||  | |  ||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||| || || ||||| || ||
gtaacttaactagttagcttctg-cttgtgatacattaccattattgc-tgcccccctactgcctatatgattctacttgatatatggtgatttccagtttaattcattctgtatgaggaatatctatgattgcagATTTTTAGAACCCTTGGCACACCAAGTGAGACAATTTGGCCTGGGTTTTCCAAATTGCCTGGAGTCAAGGTTAACTTCGTCAAGCATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttaaccagatggtggttgttttaccctattgacttcgttattctacttgtagATTTTCCGGATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCCAAATTACCTGGAGTCAAGGTCAATTTTGTCAAACACCA
                             tattgac  putative branch site (score: 2)
                                           ttctactt  putative PPT
                  ttgtttta  TA-rich tract