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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttctcatgactctcattccattcccttttgttgaagtttggtttgggatcaatgttgtcatcaagtttgtaaattgtgtttgtttgttgttttatagACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG

Basic information

species Glycine max
transcript GLYMA08G10200.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21255776|gb|BQ452664.1|BQ452664
EST:     TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCA                         ACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
genomic: TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCAgtaagttttc ... tgttttatagACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
EST: gi|16348357|gb|BI973952.1|BI973952
EST:     TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCA                         ACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
genomic: TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCAgtaagttttc ... tgttttatagACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
EST: gi|20075922|gb|BQ094705.1|BQ094705
EST:     TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCA                         ACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
genomic: TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCAgtaagttttc ... tgttttatagACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
EST: gi|120492745|gb|EH220912.1|EH220912
EST:     TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCA                         ACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
genomic: TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCAgtaagttttc ... tgttttatagACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
EST: gi|207827812|gb|GD797507.1|GD797507
EST:     TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCA                         ACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
genomic: TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCAgtaagttttc ... tgttttatagACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
EST: gi|207804211|gb|GD775830.1|GD775830
EST:     TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCA                         ACAAAGGAAGGCCGTCCTCCGCGGCTTCTACATCAAAATCTGG
genomic: TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCAgtaagttttc ... tgttttatagACAAAGGAAGGCCGTCCT--GCGGCTTCTACATCAAAATCTGG
EST: gi|22523607|gb|BU082418.1|BU082418
EST:     TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCA                         ACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
genomic: TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCAgtaagttttc ... tgttttatagACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
EST: gi|21677852|gb|BQ630203.1|BQ630203
EST:     TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCA                         ACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
genomic: TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCAgtaagttttc ... tgttttatagACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
EST: gi|20448253|gb|BQ252377.1|BQ252377
EST:     TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCA                         ACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
genomic: TGAAGGCTGGAGCTCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCAgtaagttttc ... tgttttatagACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
EST: gi|7925286|gb|AW831312.1|AW831312
EST:     TCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCA                         ACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
genomic: TCGTAAGCATGAATTGTTAGTTACTAATGCAGTTGCAgtaagttttc ... tgttttatagACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgggatcaatgttgtcatcaagtttgtaaattgtgtttgtttgttgttttatagACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG
                                            ttgtttt  CT-rich tract
                                        tttgttgttttata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttttctcatgactctcattccattcccttttgttgaagtttggtttgggatcaatgttgtcatcaagtttgtaaattgtgtttgtttgttgttttatagACAAAGGAAGGCCGTCCTGCGGCTTCTACATCAAAATCTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA